View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_high_18 (Length: 299)
Name: NF8577_high_18
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_18 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 24267100 - 24267042
Alignment:
| Q |
204 |
ggatcacttaactattcagattttgcaatcttcaaagatttgaagactctcgacctgtc |
262 |
Q |
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| T |
24267100 |
ggatcacttaactattcggattttgcaatcttcaaagatttgacgactctcgacctgtc |
24267042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 24249351 - 24249215
Alignment:
| Q |
117 |
gattgttgtgaatggagaggagttaaatgcaacatcaccaccggaagagtcaccaaactcaaacttcaatattattccggtttatttggatcacttaact |
216 |
Q |
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| T |
24249351 |
gattgttgtgaatgggaaggagttgcatgcaacaacatcacaggaagagtcaccaaactcaaacttcaa---tattcc--tata-ctcgatcacttgatt |
24249258 |
T |
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| Q |
217 |
attcagattttgcaatcttcaaagatttgaagactctcgacct |
259 |
Q |
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| T |
24249257 |
attcggagtttgcaattttcaaagatttgaagactctcgacct |
24249215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 24267244 - 24267203
Alignment:
| Q |
21 |
gaagggtgttggaagcaagagagagaagctcttgttgctctg |
62 |
Q |
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| T |
24267244 |
gaagggtgttggaagcaagagagagaagctcttattgctctg |
24267203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 24249466 - 24249406
Alignment:
| Q |
20 |
tgaagggtgttggaagcaagagagagaagctcttgttgctctgagttcccatttggaaaat |
80 |
Q |
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| T |
24249466 |
tgaagggtgttggaagcaagagagagaagctcttaatgctatgaaatccaatttggaaaat |
24249406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 24267182 - 24267112
Alignment:
| Q |
116 |
tgattgttgtgaatggagaggagttaaatgcaacatcaccaccggaagagtcaccaaactcaaacttcaat |
186 |
Q |
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| T |
24267182 |
tgattgttgtgagtgggttggaattgaatgcaacactaccactggaagagtcaccaaaatcaaacttcaat |
24267112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0474 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9871 - 9821
Alignment:
| Q |
20 |
tgaagggtgttggaagcaagagagagaagctcttgttgctctgagttccca |
70 |
Q |
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| T |
9871 |
tgaagggtgttggaagcaagaaagagaagctcttattgctctgaattccca |
9821 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 41908799 - 41908837
Alignment:
| Q |
23 |
agggtgttggaagcaagagagagaagctcttgttgctct |
61 |
Q |
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| T |
41908799 |
agggtgttggaagcaagagagagaagcgcttattgctct |
41908837 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 18064060 - 18064024
Alignment:
| Q |
117 |
gattgttgtgaatggagaggagttaaatgcaacatca |
153 |
Q |
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| T |
18064060 |
gattgttgtgaatggagaggagttcaatgtaacatca |
18064024 |
T |
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