View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_high_19 (Length: 284)
Name: NF8577_high_19
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 114 - 268
Target Start/End: Original strand, 4970143 - 4970297
Alignment:
| Q |
114 |
caacctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaaggcagcaatattagagaaacaaacaaaccctcataaaaaata |
213 |
Q |
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| T |
4970143 |
caacctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaagacagcaatattagagaaacaaacaaaccctcataaaaaata |
4970242 |
T |
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| Q |
214 |
tttattataaaaatcacaaagatttaattaaattttgtttgtattaaacttttgc |
268 |
Q |
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| T |
4970243 |
tttattataaaaatcacaaagatttaattaaattttgtttgtattcaacttttgc |
4970297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 4970051 - 4970089
Alignment:
| Q |
18 |
aagcgaaaatagtgaatcaaaccaactggaaatcttttg |
56 |
Q |
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| T |
4970051 |
aagcgaaaatagtgaatcaaaccaactggaaatcttttg |
4970089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 117 - 268
Target Start/End: Original strand, 28571058 - 28571210
Alignment:
| Q |
117 |
cctcataatgaagcagatggtcgaagagaggatcctctaagatcatccttaaaaa-ggcagcaatattagagaaacaaacaaaccctcataaaaaatatt |
215 |
Q |
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|||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
28571058 |
cctcatgatgaagcagacgttcgaagagaggatcctctaagatcatccttaaaaaaggcatcaatattagagaaacaaacaaacccttctaaaaaatatt |
28571157 |
T |
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| Q |
216 |
tattataaaaatcacaaagatttaattaaattttgtttgtattaaacttttgc |
268 |
Q |
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| T |
28571158 |
tataataaaaatcacaaagatttaattaaattttgtttgtattcaacgtttgc |
28571210 |
T |
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