View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8577_high_20 (Length: 281)
Name: NF8577_high_20
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 32255253 - 32255003
Alignment:
| Q |
17 |
aaaagccactgaaatgatttaaacattaatggttacttgaatgctcttactctagtatttggctgagttcaaatacttggaaggtaaatattgaactttc |
116 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32255253 |
aaaaggcactaaaatgatttaaacattaatggttacttgaatgctcttactctagtatttggctgagttcaaatacttgcaaggtaaatattgaactttc |
32255154 |
T |
|
| Q |
117 |
agagaataaattttaacatcaccagtcaccaccctttctgttccgctcttctgttttgaaagctacatctatgcatttaagtttgagcaacatggtttgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32255153 |
agagaataaattttaacatcaccagtcactaccctttctgttctgctcttctgttttgaaagctacatctatgcatttaagtttgagcaacatggtttgt |
32255054 |
T |
|
| Q |
217 |
gcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32255053 |
gcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
32255003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 32250625 - 32250577
Alignment:
| Q |
84 |
ttcaaatacttggaaggtaaatattgaactttcagagaataaattttaa |
132 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32250625 |
ttcaaataactggaaggtaaatattgaactttcagagcataaattttaa |
32250577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 32244606 - 32244519
Alignment:
| Q |
180 |
tacatctatgcatttaagtttgagcaacatggtttgtgcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat |
267 |
Q |
| |
|
||||||||| |||| ||| ||||||||| ||| |||||||| || |||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
32244606 |
tacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagtaatgat |
32244519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 32244870 - 32244832
Alignment:
| Q |
94 |
tggaaggtaaatattgaactttcagagaataaattttaa |
132 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
32244870 |
tggaaggtaaatactgaactttcagagcataaattttaa |
32244832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University