View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_high_24 (Length: 251)

Name: NF8577_high_24
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_high_24
NF8577_high_24
[»] chr8 (17 HSPs)
chr8 (74-251)||(28299905-28300079)
chr8 (120-245)||(38668181-38668306)
chr8 (63-145)||(33827806-33827888)
chr8 (52-197)||(35643605-35643748)
chr8 (52-194)||(29520789-29520931)
chr8 (67-124)||(29717249-29717306)
chr8 (69-197)||(490492-490620)
chr8 (65-137)||(41971847-41971919)
chr8 (75-135)||(43904724-43904784)
chr8 (52-135)||(17491713-17491796)
chr8 (63-154)||(30559844-30559935)
chr8 (51-194)||(35914601-35914744)
chr8 (52-106)||(4011223-4011277)
chr8 (52-113)||(13589619-13589680)
chr8 (79-172)||(21425213-21425306)
chr8 (53-105)||(24558624-24558676)
chr8 (65-137)||(42584512-42584584)
[»] chr2 (14 HSPs)
chr2 (52-239)||(17581599-17581792)
chr2 (52-159)||(21834694-21834801)
chr2 (85-237)||(13592248-13592406)
chr2 (63-161)||(13149483-13149581)
chr2 (193-239)||(21835207-21835253)
chr2 (52-197)||(33287561-33287706)
chr2 (52-197)||(43573127-43573271)
chr2 (69-177)||(19336910-19337018)
chr2 (69-128)||(26670925-26670984)
chr2 (63-197)||(9496017-9496151)
chr2 (63-113)||(19024329-19024379)
chr2 (54-172)||(31254430-31254548)
chr2 (65-171)||(45077880-45077988)
chr2 (65-113)||(11412861-11412908)
[»] chr7 (19 HSPs)
chr7 (64-251)||(23087038-23087232)
chr7 (65-197)||(36101774-36101906)
chr7 (65-197)||(27893560-27893692)
chr7 (69-137)||(35922410-35922478)
chr7 (52-135)||(37976375-37976458)
chr7 (52-135)||(45601616-45601699)
chr7 (52-106)||(28628021-28628075)
chr7 (65-106)||(28542032-28542073)
chr7 (63-107)||(28562453-28562497)
chr7 (52-135)||(36239855-36239938)
chr7 (63-194)||(40979928-40980059)
chr7 (52-130)||(1569156-1569234)
chr7 (53-102)||(29653638-29653687)
chr7 (52-113)||(43281971-43282032)
chr7 (52-140)||(3457501-3457589)
chr7 (73-113)||(4066925-4066965)
chr7 (9-49)||(5335840-5335880)
chr7 (69-113)||(28355322-28355366)
chr7 (109-197)||(44951352-44951440)
[»] chr5 (11 HSPs)
chr5 (52-244)||(23980084-23980282)
chr5 (63-251)||(33157765-33157962)
chr5 (90-170)||(41808100-41808180)
chr5 (63-177)||(9235198-9235311)
chr5 (63-145)||(14725669-14725751)
chr5 (209-250)||(32759885-32759926)
chr5 (52-99)||(15489587-15489634)
chr5 (63-106)||(28186863-28186906)
chr5 (69-134)||(32759733-32759798)
chr5 (65-106)||(39322154-39322195)
chr5 (65-113)||(36200882-36200930)
[»] chr1 (19 HSPs)
chr1 (68-251)||(52633106-52633298)
chr1 (73-199)||(16272817-16272942)
chr1 (70-196)||(43375596-43375722)
chr1 (52-135)||(40416511-40416594)
chr1 (65-193)||(4590533-4590661)
chr1 (65-159)||(9002505-9002599)
chr1 (63-197)||(41560380-41560514)
chr1 (57-172)||(52532638-52532753)
chr1 (63-137)||(12930368-12930442)
chr1 (52-106)||(42501248-42501302)
chr1 (52-114)||(46226369-46226431)
chr1 (54-103)||(3818947-3818996)
chr1 (52-113)||(7762518-7762579)
chr1 (199-244)||(9002623-9002668)
chr1 (65-130)||(19936613-19936678)
chr1 (63-104)||(26299236-26299277)
chr1 (63-136)||(27520265-27520338)
chr1 (52-113)||(52561670-52561731)
chr1 (9-49)||(22090012-22090052)
[»] chr4 (16 HSPs)
chr4 (70-247)||(8917274-8917454)
chr4 (63-185)||(17666059-17666174)
chr4 (63-193)||(26037506-26037636)
chr4 (73-197)||(55007907-55008031)
chr4 (80-132)||(55772157-55772209)
chr4 (80-132)||(55836393-55836445)
chr4 (52-195)||(51421870-51422013)
chr4 (52-135)||(53518382-53518465)
chr4 (65-107)||(31459147-31459189)
chr4 (52-113)||(28351699-28351760)
chr4 (64-113)||(31043224-31043273)
chr4 (70-113)||(27049258-27049301)
chr4 (74-113)||(28486083-28486122)
chr4 (63-106)||(31403122-31403165)
chr4 (52-130)||(45204903-45204981)
chr4 (70-130)||(25574982-25575042)
[»] chr6 (7 HSPs)
chr6 (63-251)||(25493789-25493981)
chr6 (52-197)||(34502-34647)
chr6 (64-194)||(5095986-5096116)
chr6 (63-113)||(6055852-6055902)
chr6 (52-113)||(4797066-4797127)
chr6 (52-169)||(31818671-31818788)
chr6 (63-107)||(9593795-9593839)
[»] chr3 (26 HSPs)
chr3 (196-247)||(43412150-43412201)
chr3 (65-177)||(19758040-19758151)
chr3 (52-195)||(45486848-45486994)
chr3 (63-130)||(45289155-45289222)
chr3 (52-113)||(19676162-19676223)
chr3 (52-105)||(32052607-32052660)
chr3 (65-113)||(19737137-19737185)
chr3 (52-112)||(39600763-39600823)
chr3 (164-251)||(43111210-43111300)
chr3 (63-195)||(54128530-54128662)
chr3 (63-106)||(19162675-19162718)
chr3 (65-136)||(29601045-29601116)
chr3 (63-194)||(44133845-44133975)
chr3 (52-130)||(40116532-40116610)
chr3 (63-113)||(48657409-48657459)
chr3 (63-113)||(49042087-49042137)
chr3 (63-113)||(50960718-50960768)
chr3 (68-113)||(36304122-36304167)
chr3 (93-194)||(40106620-40106721)
chr3 (74-194)||(48712075-48712195)
chr3 (63-135)||(30294180-30294252)
chr3 (52-104)||(36820067-36820119)
chr3 (69-113)||(39235295-39235339)
chr3 (65-113)||(44571580-44571628)
chr3 (63-155)||(49841767-49841859)
chr3 (63-103)||(52678941-52678981)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-105)||(178509-178562)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 28300079 - 28299905
Alignment:
Q  74 attatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtggt 173  Q
    |||| ||||| || |||||||||||||||||||||||| |  ||| |||||| ||||||||||| ||||||| |||||||||||||||| |||||  ||     
T  28300079 attaggaaagtttaatagattaatgagttggatctaaacatgatttatgataaaacaatatgacgtatttcggtccatgtagtcgatcccacttaaagga 28299980  T
Q  174 ataatatttggtggttgttgttgtcttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
    |||||||||||| |||||||| || ||||  ||| ||||||||||||||||   |||||||||||| |||||||||||    
T  28299979 ataatatttggttgttgttgtcgttttttagaagcattaactcatgctcaa---caactattatttcatttcatgatc 28299905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 38668181 - 38668306
Alignment:
Q  120 atgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtggtataatatttggtggttgttgttgtcttttgaaagtattaactcatg 219  Q
    |||||| ||||||||||| ||||||| ||||||||||||| || |||||  |  ||||| |||||| |||||| |||||||||| ||| |||||||||||    
T  38668181 atgatataacaatatgacgtatttcggtccatgtagtcgaccccacttatcgagataatgtttggttgttgttattgtcttttggaagaattaactcatg 38668280  T
Q  220 ctcaacaacaactattattttatttc 245  Q
    |||||||||||||||| |||| ||||    
T  38668281 ctcaacaacaactatttttttttttc 38668306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 33827888 - 33827806
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcg 145  Q
    ||||| |||||||||  ||| |||||||||||||||| |||||||||||||   || |||||||||||||||||| |||||||    
T  33827888 taagagaaactattaaaaaatatttatagattaatgaattggatctaaatatggtttatgatagaacaatatgacgtatttcg 33827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 35643748 - 35643605
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||| ||||| ||||||| || |||||||||||||||||| |||||   || |||||||||||   || ||||||| | |||||    
T  35643748 tagaaaaactataagagaaattattaagaaagatctagagattaatgagttggatcgaaatatggtttatgatagaaca--ctgccatattttgatccat 35643651  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgttgt 197  Q
    |||| | | || ||||||||| |||||  ||||| |||||||||||    
T  35643650 gtagcctaccccacttagtgggataatgcttggttgttgttgttgt 35643605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 29520789 - 29520931
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||||| ||| ||| |||||| |||||||||||||||||| |||||   || ||||||||||| |||| | || || | |||||    
T  29520789 tagaaaaactataagagaaactgttaggaacgatttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccat 29520888  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgt 194  Q
    |||| | | || | ||||||| |||||  ||||| ||||||||    
T  29520889 gtagcccaccccatttagtgggataatgcttggttgttgttgt 29520931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 29717306 - 29717249
Alignment:
Q  67 aaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgat 124  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||| ||| |||||    
T  29717306 aaaatctattaagaaagatttaaaggttaatgagttggatctaaataaaatttatgat 29717249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 490492 - 490620
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgactta 168  Q
    ||||||| | |||||||||| ||||| |||||||||||| |||||   || ||||||||||| |||| | || || | ||||||||| ||| || |||||    
T  490492 aaactataaggaaagatttagagattgatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccactta 490591  T
Q  169 gtggtataatatttggtggttgttgttgt 197  Q
    |||| ||||   ||| | |||||||||||    
T  490592 gtgggataaggcttgtttgttgttgttgt 490620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 41971919 - 41971847
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgac 137  Q
    |||||||||| || |||||||||| ||||||||||||||||   ||||| | || ||||||||||| ||||||    
T  41971919 agaaaaactactaagaaagatttagagattaatgagttggactgaaatattgtttatgatagaacattatgac 41971847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 43904784 - 43904724
Alignment:
Q  75 ttatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||| ||||||| ||||||||||||||||||||||||   || ||||||||||| ||||    
T  43904784 ttatgagagatttagagattaatgagttggatctaaatatggtttatgatagaacattatg 43904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 17491796 - 17491713
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    ||||||||| |||||| ||||||||| |||||| ||  |||||||||||||||| | |||||   || ||||||||||| ||||    
T  17491796 tagaaaaactgtaagagaaactattaagaaagacttggagattaatgagttggaccaaaatatggtttatgatagaacattatg 17491713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 30559844 - 30559935
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgta 154  Q
    ||||| ||||||| | |||||||||| |||||||||||||||||| | |||   || ||||||||||| |||||| || || | ||||||||    
T  30559844 taagagaaactatcaggaaagatttagagattaatgagttggatccatatatggtttatgatagaacattatgacgtaatttgatccatgta 30559935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 35914744 - 35914601
Alignment:
Q  51 atagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttcca 150  Q
    ||||||||||  ||||| ||||||||| |||||| ||  |||||||||||||||| | |||||   || ||||||||||| |||| | || || | ||||    
T  35914744 atagaaaaactataagagaaactattaggaaagacttgaagattaatgagttggaccaaaatatggtttatgatagaacattatggcgtaatttgatcca 35914645  T
Q  151 tgtagtcgatccgacttagtggtataatatttggtggttgttgt 194  Q
    |||||  || || ||||||||  |||| | ||||| ||||||||    
T  35914644 tgtagctgaccccacttagtgagataagacttggttgttgttgt 35914601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 4011223 - 4011277
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    |||||||||  ||||| ||||||||| ||||||| || |||||||||||||||||    
T  4011223 tagaaaaactataagagaaactattaagaaagatctaaagattaatgagttggat 4011277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 13589619 - 13589680
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||  ||||| |||||||||  ||||||||| |||||||||||||| ||| |||||    
T  13589619 tagaaaaactataagagaaactattagaaaagatttaaagattaatgagttgaatcaaaata 13589680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 21425213 - 21425306
Alignment:
Q  79 gaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtgg 172  Q
    ||||||| || |||||||||||||||||| |||||  ||| |||||||| || |||| |||| || | |||||||||  || || |||||||||    
T  21425213 gaaagatatagagattaatgagttggatcgaaatatgatttatgatagaccattatggcataatttgatccatgtagcagaccctacttagtgg 21425306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 24558624 - 24558676
Alignment:
Q  53 agaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttgga 105  Q
    ||||||||| ||||| ||| ||||| |||||||||| ||||||||||| ||||    
T  24558624 agaaaaacaataagagaaattattaagaaagatttagagattaatgagctgga 24558676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 42584512 - 42584584
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgac 137  Q
    ||||||||||| | ||||||| ||||| ||||||| ||||||| |||||   || ||||||||||| ||||||    
T  42584512 agaaaaactataaggaaagatctataggttaatgatttggatccaaatatggtttatgatagaacattatgac 42584584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 17581599 - 17581792
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| | ||||||| |||||||||| | ||| |||||||| |||||||||  ||| |||||||||||||||||||||||||| || ||    
T  17581599 tagaaaaactataagagagactattacgaaagatttacatatttatgagttgaatctaaatatgatttatgatagaacaatatgacatatttcggtctat 17581698  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgtt------gtcttttgaaagtattaactcatgctcaacaacaactattattt 239  Q
    ||||||||||| ||||||| | ||||  ||||||||||||||||      |||||||  ||| ||||||||| |||||||||||||||||||||    
T  17581699 gtagtcgatcccacttagtaggataaagtttggtggttgttgttgtcgtcgtcttttagaagcattaactcaagctcaacaacaactattattt 17581792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 21834694 - 21834801
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||||||||| |||| |||||||||||||||||||||||||||||    || |||||||||||||||||||||||| | |||||    
T  21834694 tagaaaaactataagataaactattaggaaatatttatagattaatgagttggatctaaatttggtttatgatagaacaatatgacatattttggtccat 21834793  T
Q  152 gtagtcga 159  Q
    ||||||||    
T  21834794 gtagtcga 21834801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 13592406 - 13592248
Alignment:
Q  85 tttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtggtataatatttgg 184  Q
    ||||||||||||  ||||| || ||||||   || |||||||||||||||||| || |||  ||| ||||||| | || ||||| ||| ||||| ||||     
T  13592406 tttatagattaagaagttgaatttaaatatggtttatgatagaacaatatgacttacttcaatccgtgtagtcaaacccacttaatgggataatgtttga 13592307  T
Q  185 tggttgttgttgtc------ttttgaaagtattaactcatgctcaacaacaactattat 237  Q
    | ||||||||| ||      ||||| ||| |||||||||||||||||||||||||||||    
T  13592306 ttgttgttgttatcgtcatcttttggaagcattaactcatgctcaacaacaactattat 13592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 13149483 - 13149581
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatc 161  Q
    ||||| |||||||||||||||||||| || ||||||||| | ||| |||||   || ||||||||||| ||||||||| || | ||||| ||| |||||    
T  13149483 taagagaaactattatgaaagatttagaggttaatgagtagaatccaaatatcgttgatgatagaacattatgacataatttgatccatatagccgatc 13149581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 21835207 - 21835253
Alignment:
Q  193 gttgtcttttgaaagtattaactcatgctcaacaacaactattattt 239  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  21835207 gttgtcttttgaaaagattaactcatgctgaacaacaactattattt 21835253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 33287561 - 33287706
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||||||||| ||||||| || | ||||||||||| |||| |||||   || ||||||||||| ||||||||| || | ||| |    
T  33287561 tagaaaaactataagagaaactattaagaaagatctagaaattaatgagttagatcgaaatatggtttatgatagaacattatgacatagtttgatcctt 33287660  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgttgt 197  Q
    |||| | |  | ||||||||| | || | ||||| |||||||||||    
T  33287661 gtagccaactccacttagtgggacaagacttggttgttgttgttgt 33287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 43573271 - 43573127
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  |||||||||| | || |||||||||| || ||||||||||||||| |||||  ||| ||||| ||||  |||| | || || | |||||    
T  43573271 tagaaaaactataagaaaaacaactaggaaagattta-aggttaatgagttggatccaaatatgatttatgatcgaacgttatggcgtaatttgatccat 43573173  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgttgt 197  Q
    |||| ||| || ||||||||| ||||   ||||| |||||||||||    
T  43573172 gtagccgaccccacttagtgggataaggcttggttgttgttgttgt 43573127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 19337018 - 19336910
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgactta 168  Q
    ||||||| | |||||||||| |||||||||||||||||| |||||   || ||||||||||| |||| | || || | ||||||||| | |||| |||||    
T  19337018 aaactataaagaaagatttagagattaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaatcccactta 19336919  T
Q  169 gtggtataa 177  Q
     ||| ||||    
T  19336918 ttgggataa 19336910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 26670925 - 26670984
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaa 128  Q
    ||||||||| |||||||||| |||||||||||||||| | |||||  ||| |||||||||    
T  26670925 aaactattaagaaagatttagagattaatgagttggaccaaaatatgatttatgatagaa 26670984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 9496017 - 9496151
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||||  |||||||||| || ||||||||||||||| |||||   || ||||||||||| |||| | || || | ||||||||| | | ||    
T  9496017 taagagaaactattcagaaagatttagaggttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccc 9496116  T
Q  163 gacttagtggtataatatttggtggttgttgttgt 197  Q
     ||||||||| | ||   ||||| |||||||||||    
T  9496117 cacttagtgggacaaggcttggttgttgttgttgt 9496151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 19024329 - 19024379
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||| ||||||    
T  19024329 taagagaaactattaagaaagatctaaagattaatgagttggatataaata 19024379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 31254430 - 31254548
Alignment:
Q  54 gaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgt 153  Q
    ||||||| |||||  ||||||||| ||||||| || |||||||||||||| ||  |||||  ||| |||| |||||| |||| || | || | | |||||    
T  31254430 gaaaaactgtaagttaaactattaagaaagatctagagattaatgagttgaatagaaatatgatttatgacagaacattatggcacagtttggtacatgt 31254529  T
Q  154 agtcgatccgacttagtgg 172  Q
    |||||| || |||||||||    
T  31254530 agtcgacccaacttagtgg 31254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 45077880 - 45077988
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaat--gagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||||||||||| |||||||||| ||||||||  |||||||||| |||||   || |||||||||||  ||| |||| || | ||||||||  ||| ||    
T  45077880 agaaaaactattaagaaagatttagagattaatgagagttggatcgaaatatagtttatgatagaacataatggcataatttgatccatgtaaccgaccc 45077979  T
Q  163 gacttagtg 171  Q
     ||||||||    
T  45077980 cacttagtg 45077988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 11412861 - 11412908
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||||||| |||||||| | |||||||||||||||||| |||||    
T  11412861 agaaaaactattaggaaagatt-agagattaatgagttggatccaaata 11412908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 23087232 - 23087038
Alignment:
Q  64 aagaaaaactattatgaaagatttatagattaatgagttggatctaaataatatta-atgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    |||| ||||||||  ||||||||||| |||||||||||| || ||||| |  |||  |||||||||||||||||| ||||| | ||||||||||||| ||    
T  23087232 aagagaaactattcagaaagatttatggattaatgagttagaactaaacatgattttatgatagaacaatatgacgtattttggtccatgtagtcgaccc 23087133  T
Q  163 gacttagtggtataatatttggtggttgtt------gttgtcttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
     |||| |||  |||||||||||| ||||||      ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23087132 cactttgtgcgataatatttggttgttgttattgttgttgtcttttggaagcattaactcatgctcaacaacaactattatttcatttcatgatc 23087038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 36101906 - 36101774
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccga 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||   || ||||||||||| |||||| || || | |||||||||| || || |    
T  36101906 agaaaaattattatgaaagatttatagattaatgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtagttgacccca 36101807  T
Q  165 cttagtggtataatatttggtggttgttgttgt 197  Q
    |||||||| ||||   ||||| |||||||||||    
T  36101806 cttagtgggataaggcttggttgttgttgttgt 36101774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 27893692 - 27893560
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccga 164  Q
    ||||||||||||| |||||||||| ||||||||||| |||| | |||||   || ||||||||||| |||| |||| || | | ||||||| ||| || |    
T  27893692 agaaaaactattaagaaagatttagagattaatgagctggaccgaaatatgttttatgatagaacattatggcataatttgattcatgtagccgacccta 27893593  T
Q  165 cttagtggtataatatttggtggttgttgttgt 197  Q
    |||||||  ||||   ||||| |||||||||||    
T  27893592 cttagtgcgataaggcttggttgttgttgttgt 27893560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 35922410 - 35922478
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgac 137  Q
    ||||||||| |||||||||| || ||||||||||| |||||||||  ||| ||||||||||| ||||||    
T  35922410 aaactattaagaaagatttagaggttaatgagttgaatctaaatatgatttatgatagaacattatgac 35922478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 37976375 - 37976458
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||||||  ||||  |||||| ||||||||||||| |||||||||||||||||| |||||   || ||||||||||| ||||    
T  37976375 tagaaaaactataagtgaaactaatatgaaagatttagagattaatgagttggatccaaatatggtttatgatagaacattatg 37976458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 45601616 - 45601699
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||||||  ||||| |||| |||| ||||||| || |||||||||||||||||| |||||  ||| ||||||||||| ||||    
T  45601616 tagaaaaactataagagaaaccattaagaaagatctagagattaatgagttggatcaaaatatgatttatgatagaacactatg 45601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 28628075 - 28628021
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    |||||||||  ||||| ||||||||| |||||||||| |||||||||||||||||    
T  28628075 tagaaaaactataagagaaactattaggaaagatttagagattaatgagttggat 28628021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 28542073 - 28542032
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  28542073 agaaaaactattaagaaagatttagagattaatgagttggat 28542032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 28562497 - 28562453
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatc 107  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  28562497 taagagaaactattatgaaagatttagagattaacgagttggatc 28562453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 36239938 - 36239855
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||||||  ||||| ||||||||| |||| ||||| ||||||| |||||||||| |||||   || ||||||||||| ||||    
T  36239938 tagaaaaactataagagaaactattaggaaaaatttagagattaacgagttggatccaaatatgctttatgatagaacattatg 36239855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 40980059 - 40979928
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| |||||||||  ||||||||| || | ||||||||||||| |||||   || ||||||||||| |||| | || || | ||||||||| ||| ||    
T  40980059 taagagaaactattagaaaagatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccc 40979960  T
Q  163 gacttagtggtataatatttggtggttgttgt 194  Q
     ||||||||| ||||   ||||| ||||||||    
T  40979959 cacttagtgggataaggcttggttgttgttgt 40979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 1569156 - 1569234
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    |||||||||  |||||  |||||||| ||||||| || |||||||||||||||||| |||||   || |||||||||||    
T  1569156 tagaaaaactataagagtaactattaagaaagatctagagattaatgagttggatcaaaatatggtttatgatagaaca 1569234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29653687 - 29653638
Alignment:
Q  53 agaaaaacagtaagaaaaactattatgaaagatttatagattaatgagtt 102  Q
    |||||||| |||||| ||||||||| ||||||| || |||||||||||||    
T  29653687 agaaaaactgtaagagaaactattaagaaagatctagagattaatgagtt 29653638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 43281971 - 43282032
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||| |||||| |||| |||| | ||||| || |||||||||||||||||| |||||    
T  43281971 tagaaaaaccgtaagagaaacaattaagtaagatctagagattaatgagttggatcaaaata 43282032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 3457501 - 3457589
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacata 140  Q
    |||||||||  |||||||||||| |  |||||||  | |||||||||||||||||| ||||| | || |||||| |||| |||| ||||    
T  3457501 tagaaaaactataagaaaaactaattagaaagatcgaaagattaatgagttggatcaaaatattgtttatgataaaacattatggcata 3457589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 4066925 - 4066965
Alignment:
Q  73 tattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||| ||||||||| |||||||||||||| |||||||||    
T  4066925 tattataaaagatttagagattaatgagttgaatctaaata 4066965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5335840 - 5335880
Alignment:
Q  9 agcagagatggggatgctgtgttgaatgtgtggtaagacta 49  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  5335840 agcagagatgaggatgttgcgttgaatgtgtggtaagacta 5335880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 28355322 - 28355366
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||| ||||||||||||| |||||||| |||||| |||||    
T  28355322 aaactattaggaaagatttataggttaatgaggtggatcaaaata 28355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 44951352 - 44951440
Alignment:
Q  109 aaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtggtataatatttggtggttgttgttgt 197  Q
    ||||| |||| ||||||||||| |||||| || || | ||||||||| |||    ||||||||||||||  |||||| |||||||||||    
T  44951352 aaatattatttatgatagaacactatgacgtaatttgatccatgtagccgacaatacttagtggtataaggtttggttgttgttgttgt 44951440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 23980084 - 23980282
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    ||||| |||| ||||| ||||||||  ||| |||||||||||||||||||||||||||||||   || |||||||||||||||||||||||||  |||||    
T  23980084 tagaagaacaataagagaaactattgagaatgatttatagattaatgagttggatctaaatatggtttatgatagaacaatatgacatatttcaatccat 23980183  T
Q  152 gtagtcgatccgacttagtggtataatatttg------gtggttgttgttgtcttttgaaagtattaactcatgctcaacaacaactattattttattt 244  Q
    ||| || | || ||||||||| ||||||||||      || ||||| ||| ||||||| ||| |||| || ||||||||||||||||||||||| ||||    
T  23980184 gtaatcaaccccacttagtgggataatatttgatttttgttgttgtcgttatcttttggaagcattacctaatgctcaacaacaactattatttcattt 23980282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 33157962 - 33157765
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| |||||| ||  ||| |||||||||||||||||||||||| | ||| |||| || |||||| ||||| || ||||||| |||| ||||||||||     
T  33157962 taagagaaactactaaaaaatatttatagattaatgagttggatcaacatattatttataatagaataatataacttatttcgatccacgtagtcgatct 33157863  T
Q  163 gacttagtggtataatatttggtggttgttgtt---------gtcttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
     | || |||  ||||| ||| || |||||||||         |||||||  ||| ||||||| |||||| |||||||||||||||| |||||||||||    
T  33157862 tatttcgtgagataattttttgttgttgttgttgtctttgtcgtcttttagaagcattaacttatgctcgacaacaactattatttcatttcatgatc 33157765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 41808100 - 41808180
Alignment:
Q  90 agattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagt 170  Q
    ||||||||||||||||| ||||||  ||  ||||||||||| ||||||||  || | ||||||||||||||| ||||||||    
T  41808100 agattaatgagttggatataaatatgatgtatgatagaacattatgacatcgtttgatccatgtagtcgatctgacttagt 41808180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 9235198 - 9235311
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||||| ||||||| || ||||||||||| |||||| |||||   || ||||||||||| |||| |||| || | ||||||||| ||| ||    
T  9235198 taagagaaactattaagaaagatatagagattaatgagctggatcgaaatatggtttatgatagaacattatggcataatttgatccatgtagccga-cc 9235296  T
Q  163 gacttagtggtataa 177  Q
     ||||||||| ||||    
T  9235297 cacttagtgggataa 9235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 14725669 - 14725751
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcg 145  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||| |||||   || ||||| |||||||| |||||| ||||    
T  14725669 taagataaactattataaaagatttaaaggttaatgagttggatcaaaatatggtttatgatcgaacaatacgacataattcg 14725751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 32759885 - 32759926
Alignment:
Q  209 attaactcatgctcaacaacaactattattttatttcatgat 250  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  32759885 attaactcatgctcaacatcaactattatttcatttcatgat 32759926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 15489634 - 15489587
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatga 99  Q
    |||||||||| ||||| ||||||||| |||||| ||||||||||||||    
T  15489634 tagaaaaacaataagagaaactattaagaaagacttatagattaatga 15489587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 28186906 - 28186863
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||    
T  28186906 taagagaaactattaagaaagatttagagattaatgagttggat 28186863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 32759733 - 32759798
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatat 134  Q
    ||||||||| |||||||||||||| ||||||||||| || |||||  ||| ||||| ||| |||||    
T  32759733 aaactattaagaaagatttatagaataatgagttggttcaaaatatgatttatgatggaataatat 32759798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 39322195 - 39322154
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    ||||||||||||| ||||||| || |||||||||||||||||    
T  39322195 agaaaaactattaagaaagatctaaagattaatgagttggat 39322154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 36200882 - 36200930
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||||||| |||||| || || ||||||||||||||| |||||    
T  36200882 agaaaaactattataaaagatatagaggttaatgagttggatccaaata 36200930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 52633298 - 52633106
Alignment:
Q  68 aaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgactt 167  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||   || |||||||||||||||||||||||| | ||||||||||| | |   |||    
T  52633298 aaaactattatgaaagatttatagattaatgaattgtatataaatatggtttatgatagaacaatatgacatattttggtccatgtagtcaacctcgctt 52633199  T
Q  168 agtggtataatatttggtggtt---------gttgttgtcttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
    ||||| ||  | |||||| |||         |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  52633198 agtgggatggtgtttggttgttgttgttgtcgttgttgtcttttgtaagcattaactcatgctcaacaacaactattatttcatttcatgatc 52633106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 16272942 - 16272817
Alignment:
Q  73 tattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtgg 172  Q
    |||||||||| |||||||||||||||||| | |||||| ||   || |||||||||||||||||||||||| | |||||||| || |||| |||||||||    
T  16272942 tattatgaaatatttatagattaatgagtagtatctaattatggtttatgatagaacaatatgacatattttgatccatgtaatcaatcc-acttagtgg 16272844  T
Q  173 tataatatttggtggttgttgttgtct 199  Q
     ||||| | |||  |||||||||||||    
T  16272843 gataatgtctggatgttgttgttgtct 16272817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 43375722 - 43375596
Alignment:
Q  70 aactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttag 169  Q
    |||||||| |||||||||| |||||||||||||||| | |||||   || ||||||||||| ||||||||| || | ||||||||| | |||| ||||||    
T  43375722 aactattaagaaagatttagagattaatgagttggaccgaaatatggttcatgatagaacattatgacataatttgatccatgtagccaatcccacttag 43375623  T
Q  170 tggtataatatttggtggttgttgttg 196  Q
    ||| ||||   ||||| ||||||||||    
T  43375622 tgggataaagattggttgttgttgttg 43375596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 40416511 - 40416594
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||||||  ||||| ||||||||| ||||||| ||||||||||||||||||||| |||||   || ||||||||||| ||||    
T  40416511 tagaaaaactataagacaaactattaagaaagatctatagattaatgagttggatcgaaatatggtttatgatagaacattatg 40416594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 4590661 - 4590533
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccga 164  Q
    ||||||||||||| |||||||||||||||| |||||||||||  | |||  ||   |||||||||||||||   || || | ||||||||| ||| || |    
T  4590661 agaaaaactattaagaaagatttatagattgatgagttggatagatatatgatatgtgatagaacaatatggtgtaatttgatccatgtagccgacccca 4590562  T
Q  165 cttagtggtataatatttggtggttgttg 193  Q
    |||||||| ||||  |||||| |||||||    
T  4590561 cttagtgggataaggtttggttgttgttg 4590533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 9002505 - 9002599
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcga 159  Q
    ||||||||||||   |||||||||||||||||| | ||| |||||||||   || | ||||||||| ||||||||||| ||  ||||||||||||    
T  9002505 agaaaaactatttgaaaagatttatagattaataaattgaatctaaatatagtttaagatagaacattatgacatattccgggccatgtagtcga 9002599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 41560380 - 41560514
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||||| || | ||||| |||||||||||||||||| |||||    | ||||||||||| |||| | || || | ||||||||| ||| ||    
T  41560380 taagagaaactattaggatacatttagagattaatgagttggatccaaatatgggttatgatagaacattatggcgtaatttgatccatgtagccgaccc 41560479  T
Q  163 gacttagtggtataatatttggtggttgttgttgt 197  Q
     ||||||||| ||||   ||||| |||||||||||    
T  41560480 cacttagtgggataaggcttggttgttgttgttgt 41560514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 52532753 - 52532638
Alignment:
Q  57 aaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagt 156  Q
    ||||| ||||| ||||||||| |||||||||| | |||||||||||||| | |||||   || ||||||||||| |||| | || || | | |||||||     
T  52532753 aaacaataagagaaactattaggaaagatttagaaattaatgagttggaacaaaatatggtttatgatagaacattatggcgtaatttgattcatgtagc 52532654  T
Q  157 cgatccgacttagtgg 172  Q
    ||| || |||||||||    
T  52532653 cgaccccacttagtgg 52532638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 12930442 - 12930368
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgac 137  Q
    ||||| ||| |||||||||| ||||| |||||| ||||||||||| |||||  ||| ||||||||| | ||||||    
T  12930442 taagagaaattattatgaaaaatttaaagattagtgagttggatccaaatatgatttatgatagaagattatgac 12930368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 42501248 - 42501302
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    |||||||||  ||||| ||| ||||| ||||||| ||||||||||||||||||||    
T  42501248 tagaaaaactataagagaaattattaagaaagatctatagattaatgagttggat 42501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 46226431 - 46226369
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataa 114  Q
    |||||||||  ||||  |||||||||||||| |||||||| ||||||||||| || |||||||    
T  46226431 tagaaaaaccataagtgaaactattatgaaatatttataggttaatgagttgcatttaaataa 46226369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 3818996 - 3818947
Alignment:
Q  54 gaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttg 103  Q
    |||||||  ||||| ||||||||| |||||||||| ||||||||||||||    
T  3818996 gaaaaactataagagaaactattaagaaagatttagagattaatgagttg 3818947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 7762579 - 7762518
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||  ||||| |||||||||  ||||||||| |  |||||||||||||||||||||    
T  7762579 tagaaaaactataagagaaactattagaaaagatttagatgttaatgagttggatctaaata 7762518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 9002623 - 9002668
Alignment:
Q  199 ttttgaaagtattaactcatgctcaacaacaactattattttattt 244  Q
    ||||||||| ||||  ||||||||||||||||||||||||| ||||    
T  9002623 ttttgaaagcattatatcatgctcaacaacaactattatttcattt 9002668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 19936613 - 19936678
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    ||||||||||||| |||||||||| |  |||||||||| |||| |||||   ||||||||||||||    
T  19936613 agaaaaactattaggaaagatttagatgttaatgagttagatccaaatatggttaatgatagaaca 19936678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 26299236 - 26299277
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttgg 104  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  26299236 taagagaaactattatgaaagatttagaggttaatgagttgg 26299277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 27520338 - 27520265
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatga 136  Q
    ||||| |||||||||  ||| ||||| ||||||||||| |||||| |||||  ||| ||||||||||| |||||    
T  27520338 taagagaaactattagaaaaaatttagagattaatgagctggatccaaatatgatttatgatagaacattatga 27520265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 52561731 - 52561670
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||  ||||| ||||| ||| |||||||||| || ||||||||||||||| |||||    
T  52561731 tagaaaaactataagagaaactgttaggaaagatttagaggttaatgagttggatccaaata 52561670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 22090012 - 22090052
Alignment:
Q  9 agcagagatggggatgctgtgttgaatgtgtggtaagacta 49  Q
    |||||||||| ||||||||||||| ||| ||||||||||||    
T  22090012 agcagagatgaggatgctgtgttggatgagtggtaagacta 22090052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 247
Target Start/End: Complemental strand, 8917454 - 8917274
Alignment:
Q  70 aactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttag 169  Q
    ||||||||  ||||||||||| ||||| |||||  |||||||||   || ||||||||| ||||||| ||||||||  |||||||||||| || |||||     
T  8917454 aactattagaaaagatttataaattaacgagttaaatctaaatatggtttatgatagaataatatgatatatttcggcccatgtagtcgaccccacttaa 8917355  T
Q  170 tggtataatatttggtggttgttgttgtc---ttttgaaagtattaactcatgctcaacaacaactattattttatttcat 247  Q
    | | ||| | |||| | ||||||| ||||   ||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  8917354 taggatattgtttgattgttgttgctgtcatcttttggaagcattaactcatgctcaacaacaactattatttcatttcat 8917274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 17666174 - 17666059
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| |||||||||  ||||||||||||||||||||||| |||  |||||       ||||||||||||||||| ||||||| ||||||||||||| ||    
T  17666174 taagagaaactattagaaaagatttatagattaatgagttagatgaaaata-------tgatagaacaatatgacgtatttcgatccatgtagtcgaccc 17666082  T
Q  163 gacttagtggtataatatttggt 185  Q
     ||||||||| ||||| ||||||    
T  17666081 cacttagtgggataatgtttggt 17666059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 26037636 - 26037506
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||||| |||||||||| || | ||||||||||||| |||||   || ||||||||||| |||| | || || | ||||||||| ||| ||    
T  26037636 taagagaaactattaggaaagatttagaggtgaatgagttggatccaaatatggtttatgatagaacactatggcgtaattggatccatgtagccgaccc 26037537  T
Q  163 gacttagtggtataatatttggtggttgttg 193  Q
     ||||||||| ||||  |||||| |||||||    
T  26037536 cacttagtgggataaggtttggttgttgttg 26037506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 55007907 - 55008031
Alignment:
Q  73 tattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtgg 172  Q
    ||||| |||||||||| |||||||||||||||| | |||||   || |||||||| || |||||| || || | ||||||||| ||| || |||||||||    
T  55007907 tattaagaaagatttagagattaatgagttggaccgaaatatggtttatgatagatcattatgacgtaatttgatccatgtagccgaccccacttagtgg 55008006  T
Q  173 tataatatttggtggttgttgttgt 197  Q
     ||||   ||||| |||||||||||    
T  55008007 gataaggcttggttgttgttgttgt 55008031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 55772157 - 55772209
Alignment:
Q  80 aaagatttatagattaatgagttggatctaaataatattaatgatagaacaat 132  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||    
T  55772157 aaagatttatagattaatgagttggatccaaataaaatttatgatagatcaat 55772209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 55836393 - 55836445
Alignment:
Q  80 aaagatttatagattaatgagttggatctaaataatattaatgatagaacaat 132  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||    
T  55836393 aaagatttatagattaatgagttggatccaaataaaatttatgatagatcaat 55836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 51421870 - 51422013
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||||||||| |||||||||| || ||||||| ||||||| ||| |   || ||||||||||| |||||| || || | |||||    
T  51421870 tagaaaaactataagagaaactattaggaaagatttagaggttaatgaattggatccaaaaatggtttatgatagaacattatgacgtaatttgatccat 51421969  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgtt 195  Q
    |||| | |||  ||||||||| ||||   ||||| |||||||||    
T  51421970 gtagccaatctcacttagtgggataaagcttggttgttgttgtt 51422013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 53518465 - 53518382
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    |||||||||  | |||||||||| || |||||||||| || |||||||||||||||||||||   || ||||||||||| ||||    
T  53518465 tagaaaaactatgagaaaaactaataggaaagatttagaggttaatgagttggatctaaatatggtttatgatagaacactatg 53518382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 31459147 - 31459189
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatc 107  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  31459147 agaaaaactattaggaaagatttagagattaatgagttggatc 31459189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 28351699 - 28351760
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||  ||||| ||||||||| |||||||||| |||||| ||||||||||| |||||    
T  28351699 tagaaaaactataagagaaactattacgaaagatttagagattattgagttggatccaaata 28351760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 31043224 - 31043273
Alignment:
Q  64 aagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||| ||||||||| |||||||||| |||||||||||||||||| |||||    
T  31043224 aagagaaactattaggaaagatttagagattaatgagttggatccaaata 31043273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 27049301 - 27049258
Alignment:
Q  70 aactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  27049301 aactattaagaaagatttatagattaatgagttggttccaaata 27049258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 28486083 - 28486122
Alignment:
Q  74 attatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  28486083 attatgaaagatttagagattaatgagttggatccaaata 28486122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 31403165 - 31403122
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    ||||||||||||||||||||||| || |||||||| ||||||||    
T  31403165 taagaaaaactattatgaaagatctagagattaattagttggat 31403122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 45204981 - 45204903
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    |||||||||  ||||| ||||||||| |||||||||| || ||||| ||||||||| |||||   || |||||||||||    
T  45204981 tagaaaaactataagagaaactattaggaaagatttagagtttaataagttggatccaaatatggtttatgatagaaca 45204903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 25574982 - 25575042
Alignment:
Q  70 aactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    |||||||| ||||||| || |||||||||||||||||| |||||   || |||||||||||    
T  25574982 aactattaagaaagatctagagattaatgagttggatcgaaatatggtttatgatagaaca 25575042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 25493981 - 25493789
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||| | ||||  ||||||||||||||||||| || ||||||   || | |||| ||||||||||| || |||  ||  ||||||| | ||    
T  25493981 taagagaaactatcaggaaaagtttatagattaatgagttgaatttaaatatggtttacgataaaacaatatgacttacttcaatctgtgtagtcaaacc 25493882  T
Q  163 gacttagtggtataatatttggtggttgttgttgtc------ttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
     ||||| ||  ||||| |||||| ||||||||||||      ||||| |||||||||||||||||||||||||||||||| || |||||||||||    
T  25493881 -acttaatgagataatgtttggttgttgttgttgtcgtcatcttttggaagtattaactcatgctcaacaacaactatta-ttcatttcatgatc 25493789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 34647 - 34502
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| |||| |||| ||||||| || |||||||||||||||||  |||||   || ||||||||||| |||| | || || | |||||    
T  34647 tagaaaaactataagagaaaccattaagaaagatctaaagattaatgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatccat 34548  T
Q  152 gtagtcgatccgacttagtggtataatatttggtggttgttgttgt 197  Q
    ||||  || || ||||||||| |||| | ||||| |||||||||||    
T  34547 gtagctgaccccacttagtgggataagacttggttgttgttgttgt 34502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 5095986 - 5096116
Alignment:
Q  64 aagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccg 163  Q
    |||| ||||| ||| ||||||||||  | ||||||||||||||| |||||   || ||||||||||| |||| | || || | || |||||| ||||||     
T  5095986 aagagaaactcttaggaaagatttagtggttaatgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatccc 5096085  T
Q  164 acttagtggtataatatttggtggttgttgt 194  Q
    ||||||||| ||||  |||||| ||||||||    
T  5096086 acttagtgggataaggtttggttgttgttgt 5096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 6055902 - 6055852
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||| |||||||||||||||||||| || |||||||||| |||| |||||    
T  6055902 taagagaaactattatgaaagatttagaggttaatgagttagatccaaata 6055852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 4797066 - 4797127
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||  ||||| |||||||||||||||||||| | ||||| |||||| ||| |||||    
T  4797066 tagaaaaacgataagataaactattatgaaagatttagaaattaacgagttgaatcgaaata 4797127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 31818671 - 31818788
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccat 151  Q
    |||||||||  ||||| ||||||||| ||||| |||  |||||||||||||||||| || ||   || ||||||||||| |||| | || || | |||||    
T  31818671 tagaaaaactataagagaaactattaggaaaggtttggagattaatgagttggatcaaagtatggtttatgatagaacattatgtcgtaatttgatccat 31818770  T
Q  152 gtagtcgatccgacttag 169  Q
    |||| ||| || ||||||    
T  31818771 gtagccgaccccacttag 31818788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 9593839 - 9593795
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatc 107  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  9593839 taagagaaactattaggaaagacttagagattaatgagttggatc 9593795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 43412150 - 43412201
Alignment:
Q  196 gtcttttgaaagtattaactcatgctcaacaacaactattattttatttcat 247  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  43412150 gtcttttgaaagcattaactcatgctcaacaacaactactatttcatttcat 43412201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 19758040 - 19758151
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccga 164  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||| ||||   || ||||||||||| ||||  ||| || | ||||||||| ||| || |    
T  19758040 agaaaaactattaggaaatatttagagattaatgagttggatctcaatatggtttatgatagaacattatggtataatttgatccatgtag-cgacccca 19758138  T
Q  165 cttagtggtataa 177  Q
    |||||||| ||||    
T  19758139 cttagtgggataa 19758151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 45486994 - 45486848
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataata---ttaatgatagaacaatatgacatatttcgttc 148  Q
    |||||||||  ||||| |||||||||||||||| ||  |||||||||| ||||| | ||||||||   || ||||||||||| |||| |||| || | ||    
T  45486994 tagaaaaactataagagaaactattatgaaagactttgagattaatgacttggaaccaaataatatggtttatgatagaacattatggcataatttgatc 45486895  T
Q  149 catgtagtcgatccgacttagtggtataatatttggtggttgttgtt 195  Q
    ||||||| ||  || ||||||||| ||||   ||||| |||||||||    
T  45486894 catgtagccggccccacttagtgggataaagcttggttgttgttgtt 45486848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 45289222 - 45289155
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||| |||||   || |||||||||||    
T  45289222 taagagaaactattaggaaagatttagagattaatgagttggatccaaatatggtttatgatagaaca 45289155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 19676223 - 19676162
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||| |||||| ||||||||| |||| ||||| || ||||||||||||||| |||||    
T  19676223 tagaaaaactgtaagagaaactattaggaaaaatttagaggttaatgagttggatccaaata 19676162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 32052660 - 32052607
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttgga 105  Q
    |||||||||  | ||| ||||||||| |||||||||||||||||||||||||||    
T  32052660 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 32052607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 19737137 - 19737185
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||| ||||    
T  19737137 agaaaaactattaggaaatatttagagattaatgagttggatctcaata 19737185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 39600823 - 39600763
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaat 112  Q
    |||||||||  ||||| ||||||||| |||||||||| || ||||||||||||||| ||||    
T  39600823 tagaaaaactataagagaaactattaagaaagatttagaggttaatgagttggatccaaat 39600763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 43111300 - 43111210
Alignment:
Q  164 acttagtggtataatatttggtggttgttgttgtc---ttttgaaagtattaactcatgctcaacaacaactattattttatttcatgatc 251  Q
    ||||||||| ||||| |||||  ||||||||||||   ||||| ||| |||||  | || ||||||||||||||||||| |||||||||||    
T  43111300 acttagtgggataatgtttgggtgttgttgttgtcgttttttggaagcattaatgcgtgttcaacaacaactattatttcatttcatgatc 43111210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 54128530 - 54128662
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||| | |||||||||| || | ||||||||||| | |||||   || ||||||||||| |||| |||| || | ||||||||| ||| ||    
T  54128530 taagagaaactataaggaaagatttagaggtcaatgagttggacccaaatatggtttatgatagaacattatggcataatttgatccatgtaggcgaccc 54128629  T
Q  163 gacttagtggtataatatttggtggttgttgtt 195  Q
     ||||||||| ||||   ||||| |||||||||    
T  54128630 cacttagtgggataaggcttggttgttgttgtt 54128662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 19162718 - 19162675
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggat 106  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||    
T  19162718 taagagaaactattaggaaagatttagagattaatgagttggat 19162675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 29601045 - 29601116
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatga 136  Q
    |||||| |||||| |||||||||| |||||||||||||||||  |||||   || ||||||||||| |||||    
T  29601045 agaaaagctattaagaaagatttagagattaatgagttggattcaaatatagtttatgatagaacattatga 29601116  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 44133975 - 44133845
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatcc 162  Q
    ||||| ||||||||| || |||| || ||||||||||| | |||| |||||   || |||||||| || |||| | ||||| | |||||||||||||||     
T  44133975 taagagaaactattaagatagatctaaagattaatgagatagatcgaaatacagttcatgatagagcattatggcgtattt-gatccatgtagtcgatct 44133877  T
Q  163 gacttagtggtataatatttggtggttgttgt 194  Q
     | ||||||||||||  |||||| ||||||||    
T  44133876 tatttagtggtataaagtttggttgttgttgt 44133845  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 40116610 - 40116532
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaaca 130  Q
    |||||||||  ||||| ||||||||| || ||||||| |||||||||||||||| | |||||   || |||||||||||    
T  40116610 tagaaaaactataagagaaactattaggatagatttagagattaatgagttggaccgaaatatggtttatgatagaaca 40116532  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 48657459 - 48657409
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||||||||| |||| || ||||||||||||||||| ||| |||||    
T  48657459 taagaaaaactattaagaaaaatctatagattaatgagttgtatcgaaata 48657409  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 49042087 - 49042137
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||| ||||||||| |||||||||| || ||||||||||||||| |||||    
T  49042087 taagagaaactattaggaaagatttagaggttaatgagttggatccaaata 49042137  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 50960768 - 50960718
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||| ||||||||| ||||| |||| |||||||||||||||||| |||||    
T  50960768 taagagaaactattaggaaaggtttagagattaatgagttggatccaaata 50960718  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 36304122 - 36304167
Alignment:
Q  68 aaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    |||||||||| ||||||| || |||||||||||||||||| |||||    
T  36304122 aaaactattaagaaagatctagagattaatgagttggatcaaaata 36304167  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 40106721 - 40106620
Alignment:
Q  93 ttaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtagtcgatccgacttagtggtataatatttggtggttgtt 192  Q
    ||||||||||||||| |||||   || ||||||||||| ||||||||| || | || ||||||| || || ||||||||| ||||   ||||| ||||||    
T  40106721 ttaatgagttggatccaaatatggtttatgatagaacattatgacataatttgatcaatgtagtggaccccacttagtgggataaggcttggttgttgtt 40106622  T
Q  193 gt 194  Q
    ||    
T  40106621 gt 40106620  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 48712195 - 48712075
Alignment:
Q  74 attatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgaca-tatttcgttccatgtagtcgatccgacttagtgg 172  Q
    |||| |||||||||| | ||| |||||||||||  |||||   || |||||| |||| ||||||| ||||||  |||||||||| ||||| |||||||||    
T  48712195 attaggaaagatttagatattgatgagttggattcaaatatggtttatgatataacattatgacattatttc-atccatgtagttgatcccacttagtgg 48712097  T
Q  173 tataatatttggtggttgttgt 194  Q
     |||||  ||||| ||||||||    
T  48712096 gataatgcttggttgttgttgt 48712075  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 30294252 - 30294180
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatg 135  Q
    ||||| |||||||||  |||||||||||| | |||||||||||||||| ||  ||| |||||| |||| ||||    
T  30294252 taagataaactattaaaaaagatttataggtcaatgagttggatctaagtatgatttatgataaaacactatg 30294180  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 36820119 - 36820067
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttgg 104  Q
    |||||||||  ||||| ||||||||| ||||||| || |||||||||||||||    
T  36820119 tagaaaaactataagagaaactattaagaaagatctagagattaatgagttgg 36820067  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 39235295 - 39235339
Alignment:
Q  69 aaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||| |||||||||| |  |||||||||||||||||||||    
T  39235295 aaactattaggaaagatttagaagttaatgagttggatctaaata 39235339  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 44571580 - 44571628
Alignment:
Q  65 agaaaaactattatgaaagatttatagattaatgagttggatctaaata 113  Q
    ||||||||||| | |||| ||||| |||||||||||||||||| |||||    
T  44571580 agaaaaactataaggaaatatttagagattaatgagttggatccaaata 44571628  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 49841767 - 49841859
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttggatctaaataatattaatgatagaacaatatgacatatttcgttccatgtag 155  Q
    ||||| |||||||||  |||||| || |||||||||||||||||| |||||   |  ||||||||||| |||| |||| || | |||||||||    
T  49841767 taagagaaactattaacaaagatctaaagattaatgagttggatcgaaatatggtatatgatagaacattatggcataatttgatccatgtag 49841859  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 52678981 - 52678941
Alignment:
Q  63 taagaaaaactattatgaaagatttatagattaatgagttg 103  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  52678981 taagagaaactattatgaaagatttagaggttaatgagttg 52678941  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 178562 - 178509
Alignment:
Q  52 tagaaaaacagtaagaaaaactattatgaaagatttatagattaatgagttgga 105  Q
    |||||||||  ||||| ||||||||| ||||||| || ||||||||||||||||    
T  178562 tagaaaaactataagagaaactattaagaaagatatagagattaatgagttgga 178509  T

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