View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_high_3 (Length: 521)
Name: NF8577_high_3
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 244 - 503
Target Start/End: Original strand, 1961593 - 1961852
Alignment:
| Q |
244 |
agatgcacatttaattgttataatcaataccattgctagctacattggaaaatccacaaagcaacttgatgataacggttaaataggtattacactgcta |
343 |
Q |
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| T |
1961593 |
agatgcacatttaattgttataatcaataccattgctagctacattggaaaatccacaaagcaacttgatgataacggttaaataggtattacactgcta |
1961692 |
T |
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| Q |
344 |
tcatgcatcccaaaattacagcaaaatgacaatgttgtctctaaaagttgtagagtattaagtggttaaggtcatcaacaaattcatggatgacaaactt |
443 |
Q |
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| T |
1961693 |
tcatgcatcccaaaattacagcaaaatgacaatgttgtctctaaaagttgtagagtattaagtggttaaggtaatcaacaaattcatggatgacaaactt |
1961792 |
T |
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| Q |
444 |
ttcattctctaatacatctgaaatccttgctttgcaatgagttctagtcttggctctgtg |
503 |
Q |
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| T |
1961793 |
ttcattctctaatacatctgaaatccttgctttgcaatgagttctagtcttggctctgtg |
1961852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 1960987 - 1961221
Alignment:
| Q |
17 |
actttctactgggg-actatattattccccttgtattttgattttgtttctggctgttttagatatttagactgtggtcattacaaagt--agttcaatg |
113 |
Q |
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| T |
1960987 |
actttctactgggggactatattattccccttgtattttgattttgtttctggctgttttagatatttagactgtggtcattacaaagtgtagttcaatg |
1961086 |
T |
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| Q |
114 |
agtgaatgttcaatgtaatgtaggtgacattgtaataaatagttgtatcaagtagcaagtgacttgtaagttcaagtattttctatgtaatacaatttgt |
213 |
Q |
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| T |
1961087 |
agtgaatgttcaatgtaatgtaggtgacattgtaataaatagttgtatcaagtagcaagtgacttgtaagttcaagtattttctatgtaatacaatttgt |
1961186 |
T |
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| Q |
214 |
gatactatttataaatgagcattgtgtgatagatg |
248 |
Q |
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| T |
1961187 |
gatactatttataaatgagcattgtgtgattgatg |
1961221 |
T |
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