View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_high_7 (Length: 412)
Name: NF8577_high_7
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 21543251 - 21542869
Alignment:
| Q |
16 |
aatagtttacttcaaggagatgagactttgaaaatagaagagtataaaatagcagcatcaattttttggctaaccatgaccaaaattttctacaggtttg |
115 |
Q |
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| T |
21543251 |
aatagtttacttcaaggagatgagactttgaaaatagaagagtataaaatagcagcatcaattttttggctaaccatgaccaaaattttctacaggtttt |
21543152 |
T |
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| Q |
116 |
catttccaaaatctcaatgtcccttcaccttttgtgttgcagaaaattgtgccttcttcattttttgagttcatttcgatgactcattgcctccaaatat |
215 |
Q |
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| T |
21543151 |
catttccaaaatctcaatgtcccttcaccttttgtgttgcagaaaattgtgccttcttcattttttgagttcatttcgatgactcattgcctccaaatat |
21543052 |
T |
|
| Q |
216 |
ttgattttatccatttcattgaaccatgtttgttgattgtaagttactttgaaataagagattatgtaccattggttggagttccnnnnnnnaaatacgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21543051 |
ttgattttatccatttcattgaaccatgtttgttgattgtaagttactttgaaataagagattatgtaccattggttggagttcctttttttaaatacgt |
21542952 |
T |
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| Q |
316 |
attgtgtttttatcaactttgtttatctgcatttaatgttggaaatttgcagggaattgagaggtttttgattgtaaattttg |
398 |
Q |
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| T |
21542951 |
attgtgtttttatcaactttgtttatctgcatttaatgttggaaatttgcagggaattgagaggtttttgattgtaaattttg |
21542869 |
T |
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