View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_1 (Length: 832)
Name: NF8577_low_1
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 28537697 - 28537346
Alignment:
| Q |
17 |
atatttttcagttatgttgaaccaaatgaaaaggggtttatcatcatcatcttcttcttc---aaatgtggttggtgatggt---------aataataat |
104 |
Q |
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| T |
28537697 |
atatttttcagttatgttgaaccaaatgaaaaggggtttatcatcatcatcttcttcttcttcaaatgtggttggtgatggtggtaatggtaataataat |
28537598 |
T |
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| Q |
105 |
gagagagaaaatactatatcatcttctgaagctaagaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaa |
204 |
Q |
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| T |
28537597 |
gagagagaaaatactatatcatcttctgaggctaagaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaa |
28537498 |
T |
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| Q |
205 |
ttatttcctattttgaacttcttcaagcttgtcagagtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatgatgctgg |
304 |
Q |
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| T |
28537497 |
ttatttcctattttgaacttcttcaagcttgtcagagtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatgatgctgg |
28537398 |
T |
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| Q |
305 |
ggttgttctactatttagggataaggtttatctgcatcctgataaggtgagc |
356 |
Q |
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| T |
28537397 |
ggttgttctactatttagggataaggtttatctgcatcctgataaggtgagc |
28537346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 479 - 832
Target Start/End: Complemental strand, 28537223 - 28536889
Alignment:
| Q |
479 |
cttgtggggctcatgaaaacaattacaagatccaagtctatttctcataataactatagtagatatcaatttattgtttcctttcatgcttttcatgtga |
578 |
Q |
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| T |
28537223 |
cttgtggggctcatgaaaacaattacaagatctaagtctatttctcataataactatagtagatatcaatttattgtttcctttcatgcttttcatgtga |
28537124 |
T |
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| Q |
579 |
gagggtccattatggcccttatgtttcatattcctttttgagttaggatatattattgtagcaattgaattgacattggtcaatctcaatttcattggga |
678 |
Q |
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| T |
28537123 |
gagggtccattatggcccttatgtttcacattcctttttgagttaggatatattattgtagcaattgaattgaca-------------------ttggga |
28537043 |
T |
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| Q |
679 |
ccaaacatgtttgaggtttttcaaccttaaacaaatcaatagttgcatcatgtaggacattgtgtaaaaagagtttggacgtctatacacgaaaaaggtt |
778 |
Q |
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| T |
28537042 |
ccaaacatgtttgaggtttttcaaccttaaacaaatcaatagttgcatcatgtaggacattgtgtaaaaagagtttggacgtctatacacgaaaaaggtt |
28536943 |
T |
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| Q |
779 |
tgaacctgtgataatttcatcaataaccctttggtttaactccatgattaatat |
832 |
Q |
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| T |
28536942 |
tgaacctgtgataatttcatcaataaccctttggtttaactccatgattaatat |
28536889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 129 - 352
Target Start/End: Complemental strand, 32397194 - 32396971
Alignment:
| Q |
129 |
tctgaagctaagaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttc |
228 |
Q |
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| T |
32397194 |
tctgaagctaagaagcttatgagattggtgaatgtggaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattg |
32397095 |
T |
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| Q |
229 |
aagcttgtcagagtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatgatgctggggttgttctactatttagggataa |
328 |
Q |
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| T |
32397094 |
aagcttgtgagagtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatgaagctggtgttattcttctcttcagggataa |
32396995 |
T |
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| Q |
329 |
ggtttatctgcatcctgataaggt |
352 |
Q |
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| T |
32396994 |
ggtctatcttcatcctgataaggt |
32396971 |
T |
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