View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_10 (Length: 525)
Name: NF8577_low_10
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 38385747 - 38385855
Alignment:
| Q |
410 |
caatggtgtgatcacaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacg |
509 |
Q |
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| T |
38385747 |
caatggtgtgatcacaattgcagtgtctgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacg |
38385846 |
T |
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| Q |
510 |
tctctgctt |
518 |
Q |
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| T |
38385847 |
cctttgctt |
38385855 |
T |
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Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 423 - 518
Target Start/End: Original strand, 29438979 - 29439074
Alignment:
| Q |
423 |
acaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacgtctctgctt |
518 |
Q |
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| T |
29438979 |
acaattgcagtgtttgttttcctctacgcaaacattgcaatttgccaactgcacaggcaaagcgactatattttcatcatgttcacgtctttgctt |
29439074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 29438889 - 29438980
Alignment:
| Q |
19 |
ccatccacgaccttggagtggtttcatccttgtctccttcctaaagtcctatatgttgtaaagacagcaagggattgggggaaattgaggac |
110 |
Q |
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| T |
29438889 |
ccatccacgaccttggagtggtttcatccttgtctccttcctaaagtcctatatgttgtaaagacagtaagggattgggggaaattgaggac |
29438980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 34570283 - 34570192
Alignment:
| Q |
309 |
catgaactagattagctccatcatatcaaaaaacctc--atgtatactctgcgttgattgaatatacatcaatctagtatacaccaaatcac |
398 |
Q |
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| T |
34570283 |
catgaactatagtagctccatcacatcggaaaacctcttatatatactttacattgattgaatatacatcgatccagtacacaccagatcac |
34570192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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