View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8577_low_12 (Length: 516)
Name: NF8577_low_12
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 25822054 - 25821550
Alignment:
| Q |
1 |
gatctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtata--agccttcaacaggcg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25822054 |
gatctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtatataagccttcaacaggcg |
25821955 |
T |
|
| Q |
99 |
tagctcctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25821954 |
aagctcctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggac |
25821855 |
T |
|
| Q |
199 |
tcaaaaacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgacaatggacacagctgtaataatatttcttcggat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25821854 |
tcaaaaacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgacaatggacacagctgtaataatatttcttcggat |
25821755 |
T |
|
| Q |
299 |
cacggtgccttgtgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttatacat |
398 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25821754 |
cacggcgccttgcgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttatacat |
25821655 |
T |
|
| Q |
399 |
cctaaattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttcatagtttgaggtccacctacatgttgt |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25821654 |
cctaaattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttcatagtttgaggtccacctacatgttgt |
25821555 |
T |
|
| Q |
499 |
ttctg |
503 |
Q |
| |
|
||||| |
|
|
| T |
25821554 |
ttctg |
25821550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 25816261 - 25815921
Alignment:
| Q |
4 |
ctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtataagccttcaacaggcgtagct |
103 |
Q |
| |
|
||||||||||| | | |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||| |||| || | |
|
|
| T |
25816261 |
ctcaatgtgaaaggaaccattgcagaagcacttggtgaatttgaataaaatgtaggtggaggcaaagcagaactggtagtagcattcaacgggcgaagtt |
25816162 |
T |
|
| Q |
104 |
cctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggactcaaa |
203 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||||| |||||| ||||||||| ||||| | ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25816161 |
cctcatgattgtgagcaaagaagcaaacttctcttctgcattcagttccatttctgcaatacattgttctgtatcgactaggatgcagcccggactcaaa |
25816062 |
T |
|
| Q |
204 |
aacaccatgtgcatattgacatgtatcccctttactgcatgatcca---ttctgaaattcatgacaatggacacagctgtaataatatttcttcggatca |
300 |
Q |
| |
|
| ||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||| |||||||| ||| | | ||||||| ||||| |||||||||| |
|
|
| T |
25816061 |
agcaccatgtgcatattcacatgcatcccctttccagcatgatccagatttctgaaatgcatgacaaaggagataactgtaattatattgcttcggatca |
25815962 |
T |
|
| Q |
301 |
cggtgccttgtgatttccccagaatgagcaaagggacattc |
341 |
Q |
| |
|
||| || || | ||||||||| |||| |||||| |||||| |
|
|
| T |
25815961 |
cggcgctttaagttttccccaggatgaacaaaggaacattc |
25815921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 4 - 471
Target Start/End: Complemental strand, 25813020 - 25812558
Alignment:
| Q |
4 |
ctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtataagccttcaacaggcgtagct |
103 |
Q |
| |
|
||||||||||| |||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| | ||| |||| |||| | ||| | || |||| |
|
|
| T |
25813020 |
ctcaatgtgaaagaatccattgaagaagcacaaggtgaatttgaatatgatgtaggtgaaggcaaaggacaaccggtagaagcatataacggtcgaagct |
25812921 |
T |
|
| Q |
104 |
cctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggactcaaa |
203 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| |||||| | ||| ||| ||||||||| ||||| | ||| || | ||||| |||||| | ||||| |
|
|
| T |
25812920 |
cctctggtttgtgagcaaaaaagcaaacccttctggtgcatctggtttcatccttgcaaagccttgttatatattgagctggatgaagccagcattcaaa |
25812821 |
T |
|
| Q |
204 |
aacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgacaatggacacagctgtaataatatttcttcggatcacgg |
303 |
Q |
| |
|
|| |||||||||||||| ||| | ||||||||| || |||||||| ||| |||| || | ||| ||||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
25812820 |
aataccatgtgcatattcacaagcatccccttttctacatgatcccttccgaaactcggggcaagggacacatgtgtaatgatatttcctcgaatcacgg |
25812721 |
T |
|
| Q |
304 |
tgccttgtgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttatacatcctaa |
403 |
Q |
| |
|
|||||| | ||||||| | |||| ||||||| || || ||||||||||||| | || ||| ||| ||| |||||||||||||| || ||||||||| |
|
|
| T |
25812720 |
cgccttgcg-tttcccctggatgaacaaaggggcactcagtccaatcatgag----aataacccttgaacaaggcttcactttgaatgtaaacatcctaa |
25812626 |
T |
|
| Q |
404 |
attcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttc |
471 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
25812625 |
attcatctgtactatatatctcattgtttatgtcaggtagggatggattaattggataatctttcttc |
25812558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 471
Target Start/End: Complemental strand, 25818688 - 25818223
Alignment:
| Q |
4 |
ctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtataagccttcaacaggcgtagct |
103 |
Q |
| |
|
||||||||||| ||||| || ||| | ||| |||||||| |||| ||||||||||||||| |||||||||| ||| || | | || | || |||| |
|
|
| T |
25818688 |
ctcaatgtgaaagaatctatcaaagaagaactaggtgaattggaatatgatgtaggtgaaggaaaagcagaacccgtaaaatcatacagtggtcgaagct |
25818589 |
T |
|
| Q |
104 |
cctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggactcaaa |
203 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| ||||| ||| ||| |||||| || ||||||| ||| |||||||||| |||||| |||| | |
|
|
| T |
25818588 |
cctcgggtttgtgagcaaaaatgcaaacgcttctggtgcagcaggtttcatccttgcaatgccttgttctatattgaccaggatgaagccagcactcgca |
25818489 |
T |
|
| Q |
204 |
aacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgac-aatggacacagctgtaataatatttcttcggatcacg |
302 |
Q |
| |
|
|| |||||||||||||| ||| | ||||||||| |||||||| || ||| |||| ||| ||| || |||||||| |||||| ||||||| || ||||||| |
|
|
| T |
25818488 |
aataccatgtgcatattcacaagcatcccctttgctgcatgaccctttccgaaactcaggacaaagggacacaggtgtaatgatatttcctcagatcacg |
25818389 |
T |
|
| Q |
303 |
gtgccttgtgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttatacatccta |
402 |
Q |
| |
|
| |||||| | ||||||| | || ||||| | || | |||||||||||||| || | ||| | | ||| ||||| |||||||| | |||||||| |
|
|
| T |
25818388 |
gcgccttgcgttttccccggggtggacaaagtggcacttggtccaatcatgagg---ataagcccttaaacaaggcttccctttgaatgcaaacatccta |
25818292 |
T |
|
| Q |
403 |
aattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttc |
471 |
Q |
| |
|
||||||||||| |||||| |||||| |||||| |||||| |||| |||| || |||||||||||||| |
|
|
| T |
25818291 |
aattcatctgtgctatatatctcattttttatgccaggtatggatggatcaattggataatctttcttc |
25818223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 4 - 471
Target Start/End: Complemental strand, 33648219 - 33647755
Alignment:
| Q |
4 |
ctcaatgtgaaggaatccattgcagaggcacttggtgaatttgaatttgatgtaggtgaaggcaaagcagaactggtataagccttcaacaggcgtagct |
103 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| | |||||||| |||| |||| | |||| | || |||| |
|
|
| T |
33648219 |
ctcaatgtgaaagaatccattgaagaagcactaggtgaatttgaatatgatgtaggtgaaggtagagcagaaccggtagaagcatacaacggtcgaagct |
33648120 |
T |
|
| Q |
104 |
cctcgggtttgtgagcaaagaagcaaatttctcttgtgcatttagttccattattgcaaagcgttgttctgtatcgaccaggatgcagccaggactcaaa |
203 |
Q |
| |
|
|||| || |||||||| || ||||||| ||| |||||| ||||| ||| ||||||||| ||||||||||| || ||||||| |||||| | ||||| |
|
|
| T |
33648119 |
cctctggcttgtgagcgaaaaagcaaacccttctcgtgcatctagtttcatccttgcaaagccttgttctgtattgagcaggatgaagccagcattcaaa |
33648020 |
T |
|
| Q |
204 |
aacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgacaatggacacagctgtaataatatttcttcggatcacgg |
303 |
Q |
| |
|
|| |||||||||||||| | | | ||||||||| |||||||||| ||| |||| || | ||| ||||||| |||||| | ||||| || |||| ||| |
|
|
| T |
33648019 |
aataccatgtgcatattcagaagcatcccctttgttgcatgatcccttccgaaactcggggcaagggacacatgtgtaatgacatttcctcagatcgcgg |
33647920 |
T |
|
| Q |
304 |
tgccttgtgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttatacatcctaa |
403 |
Q |
| |
|
|||||| | ||||||| |||| ||||||| || || ||||||||||||| | | | ||| ||| ||| |||||||||||||| || ||||||||| |
|
|
| T |
33647919 |
cgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaa---taagcccttgaacaaggcttcactttgaatgtaaacatcctaa |
33647823 |
T |
|
| Q |
404 |
attcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttc |
471 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
33647822 |
attcatctgtactatatattccattctttatgtcaggtagggatggatcaatgggataatctttcttc |
33647755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 437
Target Start/End: Complemental strand, 30122469 - 30122217
Alignment:
| Q |
182 |
caggatgcagccaggactcaaaaacaccatgtgcatattgacatgtatcccctttactgcatgatccattctgaaattcatgacaatggacacagctgta |
281 |
Q |
| |
|
||||||| |||||| ||||||||| ||| |||||||| | ||| | ||| ||||||||||| ||||| ||| |||| ||| ||||| |||| ||||| || |
|
|
| T |
30122469 |
caggatgaagccagcactcaaaaataccgtgtgcatagtcacaagaatctcctttactgcaagatcctttccgaaactcaggacaagggacgcagctata |
30122370 |
T |
|
| Q |
282 |
ataatatttcttcggatcacggtgccttgtgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttc |
381 |
Q |
| |
|
|| ||||||| | ||||| || |||||| ||||||| | |||| |||| ||||| || ||||||||||||| | | | ||| ||| ||| ||||| |
|
|
| T |
30122369 |
atgatatttccttggatcgcgtcgccttgcattttcccctggatgaacaaaaggacactcggtccaatcatgagaa---taagcccttgaacaaggcttc |
30122273 |
T |
|
| Q |
382 |
actttgaatttatacatcctaaattcatctgtaatatatacctcattctttatgtc |
437 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||| |||||| | ||||||| ||||| |
|
|
| T |
30122272 |
actttgaatgtatacatcctaaactcatcggtactatatatcccattcttaatgtc |
30122217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University