View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_13 (Length: 487)
Name: NF8577_low_13
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 147 - 470
Target Start/End: Complemental strand, 4675166 - 4674843
Alignment:
| Q |
147 |
cacacaacaacatactatacacgcacacaatttcagattttgctcatttatttcaattaaaatgtatttaacttaagcaatgaggttatgtcacataaca |
246 |
Q |
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| T |
4675166 |
cacacaacaacatactatacacacacacaatttcagattttgcttatttatttcaattaaaatgtatttaacttaagcaatgaggttatgtcacataaca |
4675067 |
T |
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| Q |
247 |
tgtcgtgcgggttgtgtggtgaatattgtcctgcacaatagcgcttctcnnnnnnnaaaaattggcatagcgtcgttgtatgatatgttgataattatca |
346 |
Q |
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| T |
4675066 |
tgtcgtgcgagttgtgtggtgaatattgtcctgcacaatagcgcttctcttttttaaaaaattggcatagcgtcgttgtatgatatgttgataattatcg |
4674967 |
T |
|
| Q |
347 |
atctgtgcaggtcttaagtgaggtaagaaggttagtggaaaaatacaagaatgaagaaataagcataactataacaggtcacagtttaggtgctgcaatt |
446 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4674966 |
atctgtgcaggtcttaagtgaggtaagaaggttggtggagaaatacaagaatgaagaaataagcataactataacaggtcacagtttaggtgctgcaatt |
4674867 |
T |
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| Q |
447 |
gcaactctaaatgcagtggacatt |
470 |
Q |
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| T |
4674866 |
gcaactctaaatgcagtggacatt |
4674843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4675224 - 4675168
Alignment:
| Q |
15 |
gacatcaatttagttgtaagaatttaacttgggtaacatagtttaaacactttaatt |
71 |
Q |
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| T |
4675224 |
gacatcaatttagtggtaagaatttaacttaggtaacatagtttaaacactttaatt |
4675168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 6800512 - 6800624
Alignment:
| Q |
104 |
aacaaaaatgctaaagagcacgacaaccgcttgtcgtggaatccacacaacaacatactatacacgcacacaatttcagattttgctcatttatttcaat |
203 |
Q |
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|||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||| || |||||||||||||| |
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| T |
6800512 |
aacacaaatgctaatgagcacgacaacaatttgtcgtggaatccacacaacaacatattatatgagcgcacaatttcagatcttattcatttatttcaat |
6800611 |
T |
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| Q |
204 |
taaaatgtattta |
216 |
Q |
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|||||| |||||| |
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| T |
6800612 |
taaaatttattta |
6800624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 6800694 - 6800770
Alignment:
| Q |
219 |
ttaagcaatgaggttatgtcacataacatgtcgtgcgggttgtgtggtgaatattgtcctgcacaatagcgcttctc |
295 |
Q |
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| T |
6800694 |
ttaagcaatgaggttatgccaaataacatgtcgtgcgggttgtgtggtgaatattgtcgtgcacaataacacttctc |
6800770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 295
Target Start/End: Complemental strand, 5409039 - 5408858
Alignment:
| Q |
109 |
aaatgctaaagagcacgacaaccgcttgtcgtggaatccacacaacaacatactatacacgcacacaatttcagattttgctcatttatttcaattaaaa |
208 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| | |||||||||| ||||||| |||||| |||||||||||| |
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| T |
5409039 |
aaatgctaaagagcacgataacaacttgtcgtggaatccacacgacaacacgttatatgcacacacaattttagatttt-ttcattt-tttcaattaaaa |
5408942 |
T |
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| Q |
209 |
tgtatttaacttaagcaatgaggttatgtcacataacatgtc--gtgcgggttgtgtggtgaatattgtcctgcacaatagcgcttctc |
295 |
Q |
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| ||| |||||||| | |||||| ||||||| |||| ||| |||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
5408941 |
tttat-----ttaagcaacaaagttatgctacataacgtgtcttgtgggggttgcgtggtgaatattgtcgtgcacaatagcacttctc |
5408858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 5384129 - 5384082
Alignment:
| Q |
109 |
aaatgctaaagagcacgacaaccgcttgtcgtggaatccacacaacaa |
156 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
5384129 |
aaatgctaaagagcacgacaacaacttgtcgtggaatccacacgacaa |
5384082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 43900085 - 43899996
Alignment:
| Q |
190 |
tcatttatttcaattaaaatgtatttaacttaagcaatgaggttatgtcacataacatgtcgtgcgggttgtgtggtgaatattgtcctgcacaa |
284 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||||| ||||||||| | ||||||| ||| ||||||||||||| ||||||| |
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| T |
43900085 |
tcatttatttcaattaaaatctatttaa-----gcaataaggttatgctacataacatattatgcgggtcgtgcggtgaatattgtcatgcacaa |
43899996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 5384039 - 5383962
Alignment:
| Q |
219 |
ttaagcaatgaggttatgtcacataacatgtcgtgcggg-ttgtgtggtgaatattgtcctgcacaatagcgcttctc |
295 |
Q |
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|||||||| |||||||| ||||||||||||| || ||| ||| ||||||||||||||| ||||||||| | |||||| |
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| T |
5384039 |
ttaagcaacaaggttatgccacataacatgtcttgtggggttgcgtggtgaatattgtcgtgcacaataacacttctc |
5383962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 34548310 - 34548233
Alignment:
| Q |
389 |
atacaagaatgaagaaataagcataactataacaggtcacagtttaggtgctgcaattgcaactctaaatgcagtgga |
466 |
Q |
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|||||||||||||||||| ||||||||| |||| || |||||||| |||| |||| |||||||| ||| | ||||||| |
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| T |
34548310 |
atacaagaatgaagaaattagcataactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtgga |
34548233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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