View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_14 (Length: 472)
Name: NF8577_low_14
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 14750821 - 14751262
Alignment:
| Q |
18 |
accacaaataagaatccatcactatcaaaatagcaaagatccccggttcttagccaaccctctgcagtaagggttgatttagttgcctcctcgttattta |
117 |
Q |
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| T |
14750821 |
accacaaataagaatccatcactatcaatatagcaaagatccccagttcttaaccaaccctctgcagtaagggttgattttgttgcctcctcgttattta |
14750920 |
T |
|
| Q |
118 |
aataacctgccatcaccaagtctttgattgttaattaaaaataacaactatgattagcatagatagaagaaacaattaatagtgttatatagtgt----t |
213 |
Q |
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| T |
14750921 |
aataacctgccatcaccaagtctttgattgttaattaaaaataacaactatgattagcatagatagaacaaacaattaata--gttatatagtgtgtggc |
14751018 |
T |
|
| Q |
214 |
tagcatttatcttaaaaaactaaatgat----------tagttaatgag--ctctacctaatgatataagctcgattaaacattcgagaatcagagttca |
301 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14751019 |
tagcatttatcttaaaaaactaaatgattatactcaaatagttaatgagctctctacctaatgatataagctcgattaaacactcgagaatcagagttca |
14751118 |
T |
|
| Q |
302 |
attcttggatcaaacaattgtttacgagactttatttagcttatctctagatcgaactttaaattattaaggtcctattttcatataggaactctagtgt |
401 |
Q |
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| T |
14751119 |
attcttggatcaaataattttttatgagactttatttagcttagctctagaccgaacttcaaattattaaggtcctattttcatataggaactctagtgt |
14751218 |
T |
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| Q |
402 |
taccacacaagaaagtatttctcttcaaaattcatttaaattca |
445 |
Q |
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| T |
14751219 |
taccacacaagaaaatatttctcttcaaaattcatttaaattca |
14751262 |
T |
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Back To:
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Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 8533165 - 8533280
Alignment:
| Q |
21 |
acaaataagaatccatcactatcaaaatagcaaagatccccggttcttagccaaccctctgcagtaagggttgatttagttgcctcctcgttatttaaat |
120 |
Q |
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||||||||||||||||| ||||||| |||||||| |||||| ||| ||| ||||||||||| ||||| ||| ||| | ||||||||||||||| | |||| |
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| T |
8533165 |
acaaataagaatccatcgctatcaatatagcaaacatcccctgtttttaaccaaccctctggagtaatggtcgatctggttgcctcctcgttactgaaat |
8533264 |
T |
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| Q |
121 |
aacctgccatcaccaa |
136 |
Q |
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| T |
8533265 |
aacctgccatcaccaa |
8533280 |
T |
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