View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_15 (Length: 457)
Name: NF8577_low_15
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 18359653 - 18359240
Alignment:
| Q |
19 |
caattcccgcagtttcaatttatgtgggatagtttggtttcttcnnnnnnntattagagtttaattagatgcactatcgatttagtttagttttatacta |
118 |
Q |
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| T |
18359653 |
caattcccgcggtttcaatttatgtgggatagtttggtttcttcaaaaaaatattagagtttaattagatgcactatcgatttagtttagttttatacta |
18359554 |
T |
|
| Q |
119 |
acattcaagagaacttatatgaccatataagttcactttataacttccttttaaaaataacagtatagtattggattgtcattagacgttaatgtaaaac |
218 |
Q |
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| T |
18359553 |
acattcaagagaacttatatgaccatataagttcactttataacttccttttaaaaataactgtataatattggattgtcattagacgttaatgtaaaac |
18359454 |
T |
|
| Q |
219 |
tagtttacatcaacaacacatcccattttcttgagagtttaatggagatgtattatcagtttaaattagttttacaccgacattcaatgagaactcatca |
318 |
Q |
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| T |
18359453 |
tagtttacatcaacaacacatcccattttcttgagagtttaatggagatgtattatcagtttaaattagttttacaccgacattcaatgagaactcatca |
18359354 |
T |
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| Q |
319 |
tattatcctcagaagttcactatgtaaccacaatttaaaagtatttgcgaaatattggattctcattggacgtctgtgtaaaactggtttacgccgaaat |
418 |
Q |
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| T |
18359353 |
tattatcctgagaagttcactatgtaaccacaatttaaaagtatttgcaaaatattggattctcattggacgtctgtgtaaaactggtttacgccgaaat |
18359254 |
T |
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| Q |
419 |
cgctgcaagttgca |
432 |
Q |
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| T |
18359253 |
cgcagcaagttgca |
18359240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 313
Target Start/End: Complemental strand, 18358759 - 18358628
Alignment:
| Q |
187 |
tattggattgtcattagacgttaatgtaaaactagtttacatcaacaacac--atcccattttcttgagagtttaatggagatgtattatcagtttaaat |
284 |
Q |
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| T |
18358759 |
tattgtattatcattagacatcagggtaaaactagtttacatcaacaatacctatcccattttctctagagtttaacagggatgtattgtcggtgtaaat |
18358660 |
T |
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| Q |
285 |
ta---gttttacaccgacattcaatgagaact |
313 |
Q |
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| T |
18358659 |
tattagttttacatcgacattcaatgagaact |
18358628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 18359807 - 18359745
Alignment:
| Q |
33 |
tcaatttatgtgggatagtttggtttcttcnnnnnnntattagagtttaattagatgcactat |
95 |
Q |
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| T |
18359807 |
tcaatctatgtgggctagtttggtttcttcacaaaaatattagagtttaattagatgcactat |
18359745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 10823771 - 10823730
Alignment:
| Q |
368 |
aaatattggattctcattggacgtctgtgtaaaactggttta |
409 |
Q |
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| T |
10823771 |
aaatattggattctcattggacttcggtgtaaaactagttta |
10823730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 30875712 - 30875748
Alignment:
| Q |
286 |
agttttacaccgacattcaatgagaactcatcatatt |
322 |
Q |
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| T |
30875712 |
agttttacaccgacatccaatgagaactcatgatatt |
30875748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 47886314 - 47886282
Alignment:
| Q |
284 |
ttagttttacaccgacattcaatgagaactcat |
316 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
47886314 |
ttagttttacaccgtcattcaatgagaactcat |
47886282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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