View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_16 (Length: 425)

Name: NF8577_low_16
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_16
NF8577_low_16
[»] chr1 (8 HSPs)
chr1 (1-399)||(12774834-12775242)
chr1 (1-230)||(12804511-12804740)
chr1 (1-231)||(50788818-50789048)
chr1 (16-231)||(4160289-4160504)
chr1 (6-230)||(36989242-36989466)
chr1 (1-238)||(42287014-42287251)
chr1 (16-230)||(31644058-31644272)
chr1 (31-230)||(28496106-28496305)
[»] chr8 (2 HSPs)
chr8 (16-231)||(5788722-5788937)
chr8 (6-212)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (93-230)||(40040778-40040915)
chr2 (7-230)||(42898201-42898424)
chr2 (28-231)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (73-230)||(22085506-22085663)
chr4 (7-232)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (64-232)||(40749350-40749518)
chr7 (100-212)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (46-215)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 12774834 - 12775242
Alignment:
Q  1 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12774834 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagc 12774933  T
Q  101 atggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatag 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12774934 atggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatag 12775033  T
Q  201 atgtgactgtggcactctcttctccaggtaataaacatatacctaataaatcagttccaatttttctactgcgagttttttcgctatcgatttttgttaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12775034 atgtgactgtggcactctcttctccaggtaataaacatatacctaataaatcagttccaatttttctattgcgagttttttcgctatcgatttttgttaa 12775133  T
Q  301 tgcaatct----------tatatatatatttgatagcatggtttaaattgtggtcgcaataacgctgcaaacatttatatatactagcagaaaacatgat 390  Q
    ||||||||          |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  12775134 tgcaatcttatatatatatatatatatatttgatagcatggtttaaattgtggtcgcaatgacgctacaaacatttatatatactagcagaaaacatgat 12775233  T
Q  391 tgatatggt 399  Q
     ||||||||    
T  12775234 cgatatggt 12775242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12804740 - 12804511
Alignment:
Q  1 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||    
T  12804740 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagc 12804641  T
Q  101 atggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatag 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12804640 atggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatag 12804541  T
Q  201 atgtgactgtggcactctcttctccaggta 230  Q
    |||||||||||||||||||||||| |||||    
T  12804540 atgtgactgtggcactctcttctcaaggta 12804511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 50789048 - 50788818
Alignment:
Q  1 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagc 100  Q
    |||||||||||| ||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | | | || |    
T  50789048 agaaaggtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaac 50788949  T
Q  101 atggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatag 200  Q
    |||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |  || |||||    
T  50788948 atggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatatag 50788849  T
Q  201 atgtgactgtggcactctcttctccaggtaa 231  Q
     ||||||||||||||||||||||||||||||    
T  50788848 gtgtgactgtggcactctcttctccaggtaa 50788818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 4160289 - 4160504
Alignment:
Q  16 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 115  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| || ||||| |||||||| || |    
T  4160289 tgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagt 4160388  T
Q  116 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 215  Q
    |||||||||| || ||||||||   |||||| ||||| || ||||||||||||||||| || | |||||| ||||| |||||||  ||||||||||| ||    
T  4160389 ggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaac 4160488  T
Q  216 tctcttctccaggtaa 231  Q
     |||||||| ||||||    
T  4160489 cctcttctcaaggtaa 4160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 36989242 - 36989466
Alignment:
Q  6 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 105  Q
    ||||||| | ||||| |||||  ||||||| |||||| ||||| |||| || ||||| || || ||||||||||| || |||| || |||||||||||||    
T  36989242 ggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggt 36989341  T
Q  106 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 205  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||| | ||| || | |||||    
T  36989342 gagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtg 36989441  T
Q  206 actgtggcactctcttctccaggta 230  Q
    ||||||| ||  |||| ||||||||    
T  36989442 actgtggaaccatcttttccaggta 36989466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42287014 - 42287251
Alignment:
Q  1 agaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagc 100  Q
    |||||||||||||||||||| || || ||||| || || || ||||||||||| ||| | || || || ||||||||||| || || |  | | | ||||    
T  42287014 agaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagc 42287113  T
Q  101 atggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatag 200  Q
    | |||||||| || ||||| |||||||| || || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  || |||||    
T  42287114 acggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatag 42287213  T
Q  201 atgtgactgtggcactctcttctccaggtaataaacat 238  Q
    |||||| |||||||| |||||||| |||||| ||||||    
T  42287214 atgtgattgtggcaccctcttctctaggtaacaaacat 42287251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 31644272 - 31644058
Alignment:
Q  16 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 115  Q
    |||||||| ||  |||||||||| ||| ||||||||||||||||||| || || || |||||||||||||| |||  |||||| ||||||||||||||||    
T  31644272 tgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 31644173  T
Q  116 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 215  Q
    |||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||   || |||| |||||| ||||| ||    
T  31644172 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggtac 31644073  T
Q  216 tctcttctccaggta 230  Q
     || || ||||||||    
T  31644072 ccttttttccaggta 31644058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 28496305 - 28496106
Alignment:
Q  31 tgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagt 130  Q
    ||||| ||||||||||||||||| || ||||| |||||||| || || || || |||| |  ||||||||| |||||||| || ||||| |||||||| |    
T  28496305 tgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaat 28496206  T
Q  131 gttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 230  Q
    |||| || |||||||| || ||||||||||||||||||||| | || || |||||||| |  || || | ||||||||||||||| |||||||| |||||    
T  28496205 gttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 28496106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 5788937 - 5788722
Alignment:
Q  16 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 115  Q
    |||||||||||||| ||||| || ||||| || ||||| ||  | || ||  | |||||||| |||||||||| ||  ||||||||||||||||| || |    
T  5788937 tgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagt 5788838  T
Q  116 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 215  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||  || ||||||||||||||||| ||    
T  5788837 ggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtggaac 5788738  T
Q  216 tctcttctccaggtaa 231  Q
     |||||||| ||||||    
T  5788737 cctcttctcaaggtaa 5788722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 33186637 - 33186843
Alignment:
Q  6 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 105  Q
    ||||||| | ||||| ||||| || |||||||| ||||| ||||| || ||| | || ||  | ||||| || || || |||| || |||||| ||||||    
T  33186637 ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt 33186736  T
Q  106 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 205  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||  ||||||| |||||    
T  33186737 gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtg 33186836  T
Q  206 actgtgg 212  Q
    | |||||    
T  33186837 attgtgg 33186843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 40040778 - 40040915
Alignment:
Q  93 tagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaag 192  Q
    ||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  ||||| |||||| |||||     
T  40040778 tagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaa 40040877  T
Q  193 gagtatagatgtgactgtggcactctcttctccaggta 230  Q
    ||||| |||||||| |||||||| || |||||||||||    
T  40040878 gagtacagatgtgattgtggcacactattctccaggta 40040915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 42898201 - 42898424
Alignment:
Q  7 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 106  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||| ||  | || ||||| ||||| || ||||| ||||  |  |||||||| ||||    
T  42898201 gtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtg 42898300  T
Q  107 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 206  Q
    |||| || ||||| ||||| ||||| |||||||| ||||| |||||||| || ||||||||||| || || || ||||| || |  || || ||||||||    
T  42898301 agaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtga 42898400  T
Q  207 ctgtggcactctcttctccaggta 230  Q
    |||||| || |||||||| |||||    
T  42898401 ctgtggaaccctcttctcaaggta 42898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 38896059 - 38895856
Alignment:
Q  28 acatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaa 127  Q
    |||||||||||  || | |||||||||||| | || ||  | ||||| || ||||| |||| || ||| || || |||||||| || ||||||||||| |    
T  38896059 acatgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgaga 38895960  T
Q  128 agtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccag 227  Q
    |||| || ||    |||||||||||||| ||||||||||| || || ||||||||||||||||  || || | |||||| ||||||||| |||| || ||    
T  38895959 agtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaag 38895860  T
Q  228 gtaa 231  Q
    ||||    
T  38895859 gtaa 38895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 22085663 - 22085506
Alignment:
Q  73 ggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcatt 172  Q
    ||||| |||||||| |||  |||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  22085663 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 22085564  T
Q  173 ctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 230  Q
      |||| |||||| ||||  ||||| | |||||| ||||||||  | |||||||||||    
T  22085563 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 22085506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 30518371 - 30518146
Alignment:
Q  7 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 106  Q
    |||||| ||||||||||   ||| ||||| |||||||| ||||||||||| ||||| ||| | ||||| || || || |||| || ||||||||||||||    
T  30518371 gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg 30518272  T
Q  107 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 206  Q
    | || || ||||||||||| ||||| || ||    ||||||||||| || |||||||||||||| || || || ||||||||||  || || | ||||||    
T  30518271 aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga 30518172  T
Q  207 ctgtggcactctcttctccaggtaat 232  Q
    |||||| ||| |||| || |||||||    
T  30518171 ctgtggaactatcttttcaaggtaat 30518146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 64 - 232
Target Start/End: Original strand, 40749350 - 40749518
Alignment:
Q  64 gacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattgga 163  Q
    |||||||| ||||| |||||||| | |  |||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  40749350 gacctcaccggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattgga 40749449  T
Q  164 aagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggtaat 232  Q
    |||||||  |||| |||||||||||||  || ||||  ||||| ||||| || |||||||| |||||||    
T  40749450 aagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaat 40749518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 44150930 - 44150818
Alignment:
Q  100 catggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtata 199  Q
    ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||||| |||||||| |||||    || ||||||||||||| ||| || |    
T  44150930 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca 44150831  T
Q  200 gatgtgactgtgg 212  Q
     |||||| |||||    
T  44150830 aatgtgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 52248539 - 52248370
Alignment:
Q  46 ccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatg 145  Q
    |||||||| || || || |||||||| ||| | || || |||| || |||||||||||||||||| |||||||| ||||||   |||||||| ||||| |    
T  52248539 ccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacg 52248440  T
Q  146 ctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 215  Q
    |||   ||| ||||| ||||| ||||   ||||  ||||| ||||  ||||||| |||||| ||||||||    
T  52248439 ctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcac 52248370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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