View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_18 (Length: 412)
Name: NF8577_low_18
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 25785188 - 25785577
Alignment:
| Q |
8 |
ttggtggtccagaaaacaacctgctgtagccagacctagcaaagaggcaaaatacatggccttagctcaagctactgctgatgttctttgggttcagacc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25785188 |
ttggtggtccagaaaacaacctgctgtagccagatatagcacagaggcaaaatacagggccttagctcaagctactgctgatgttctttgggtttagacc |
25785287 |
T |
|
| Q |
108 |
ttgctaaaagagcttattgttccattatcctatcccgttgttctttgtgataatcagtccgccgttttattgactcacaatcctattttacactcaagga |
207 |
Q |
| |
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|||| |||||||||| ||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25785288 |
ttgcagaaagagcttactgttccattctcctatcctgttgttctctgtgataatcagtccgtagttttattgactcacaatcctattttacactcaagga |
25785387 |
T |
|
| Q |
208 |
ccaaacacatggaaattgacctcttctttgttagagaaaaggttatggcaaataaattatttgttgtgcacattcttggtacagaccagtgggctgacat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25785388 |
ccaaacacatggaaattgacctcttctttgttagaggaaaggttatggcaaataaattatttgttgtgcacattcttggtacagaccagtgggctgacat |
25785487 |
T |
|
| Q |
308 |
ccttactaaacttgtctctaccgctaagttccttctaatgcgctcactcaatgttgctgaagacccacattgaggttaagcacaatttag |
397 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
25785488 |
ccttactaaacctgtctctacagctaagttccttctaatgcgctcactcaatttcgctgaagacccacattgaggttaagcacaatttag |
25785577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 381
Target Start/End: Complemental strand, 32457189 - 32456876
Alignment:
| Q |
69 |
ttagctcaagctactgctgatgttctttgggttcagaccttgctaaaagagcttattgttccattatcctatcccgttgttctttgtgataatcagtccg |
168 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||| || || | ||||| | ||| || || || | || ||| |||| |||||||| ||||| | |
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| T |
32457189 |
ttagctcaagccactgcagatgctctttgggttcagacattactca--gagctcactgtccctttttcttcccctgttattctctgtgataaccagtcag |
32457092 |
T |
|
| Q |
169 |
ccgttttattgactcacaatcctattttacactcaaggaccaaacacatggaaattgacctcttctttgttagagaaaaggttatggcaaataaattatt |
268 |
Q |
| |
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| || |||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
32457091 |
cagtcttattggctcacaatcctattttacactcaagaacaaaacacatggaggttgaccttttctttgttagagaaaaggtcctggcaaagcaattatc |
32456992 |
T |
|
| Q |
269 |
tgttgtgcacattcttggtacagaccagtgggctgacatccttactaaacttgtctctaccgctaagttccttctaatgcgctc---actcaatgttgct |
365 |
Q |
| |
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|||||||||||||| ||||||||| || |||||||| || |||||||||| ||||||||| |||||||||||||| ||| |||| ||||||||||||| |
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| T |
32456991 |
tgttgtgcacattcctggtacagatcaatgggctgatattcttactaaacctgtctctacagctaagttccttctcatgtgctccaaactcaatgttgct |
32456892 |
T |
|
| Q |
366 |
gaagacccacattgag |
381 |
Q |
| |
|
|||||||||||||||| |
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| T |
32456891 |
gaagacccacattgag |
32456876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 20030678 - 20031052
Alignment:
| Q |
8 |
ttggtggtccagaaaacaacctgctgtagccagacctagcaaagaggcaaaatacatggccttagctcaagctactgctgatgttctttgggttcagacc |
107 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||| || | |||| ||| ||| |||||| ||||||||||||||| ||||| |||| ||||||| ||||||| |
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| T |
20030678 |
ttggtggtctagaaagcaacctgttgttgccggatcaagcacagaagcagaatacagggccttagctcaagccactgcagatgctctttggattcagaca |
20030777 |
T |
|
| Q |
108 |
ttgctaaaagagcttattgttccattatcctatcccgttgttctttgtgataatcagtccgccgttttattgactcacaatcctattttacactcaagga |
207 |
Q |
| |
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|| || | ||||| | |||||| || |||| ||| ||| |||| ||||| || ||||| || || |||||| ||||||||||||||||||||||||||| |
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|
| T |
20030778 |
ttactca--gagctcactgttcctttttcctctcctgttattctctgtgacaaccagtcagcagtcttattggctcacaatcctattttacactcaagga |
20030875 |
T |
|
| Q |
208 |
ccaaacacatggaaattgacctcttctttgttagagaaaaggttatggcaaataaattatttgttgtgcacattcttggtacagaccagtgggctgacat |
307 |
Q |
| |
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| ||||||||||| ||||||| |||||||||||||||||||| ||||||| | || | ||||||||| |||| ||||||||| ||| |||||||||| |
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| T |
20030876 |
caaaacacatggagattgaccctttctttgttagagaaaaggtcctggcaaagcagttgtctgttgtgcatattcctggtacagatcagcgggctgacat |
20030975 |
T |
|
| Q |
308 |
ccttactaaacttgtctctaccgctaagttccttctaatgcgctc---actcaatgttgctgaagacccacattgag |
381 |
Q |
| |
|
|||||||||| || ||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
20030976 |
tcttactaaaccagtatctacagccaagtttcttcttatgcgctccaaactcaatgttgctgaagccccaccttgag |
20031052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 256
Target Start/End: Complemental strand, 3212172 - 3211986
Alignment:
| Q |
70 |
tagctcaagctactgctgatgttctttgggttcagaccttgctaaaagagcttattgttccattatcctatcccgttgttctttgtgataatcagtccgc |
169 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| || || ||||| || | |||||||| || | ||| | || ||||||||||||| || || |
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| T |
3212172 |
tagcacaagctactgctgatgttctctgggttcagactttactcaaagaactcactgttccatcttcttctcctactattttttgtgataatcaatcagc |
3212073 |
T |
|
| Q |
170 |
cgttttattgactcacaatcctattttacactcaaggaccaaacacatggaaattgacctcttctttgttagagaaaaggttatggc |
256 |
Q |
| |
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|| || | |||| |||| || |||||| | |||||||| || ||||||| |||||| |||||||| || ||||||||| |||| |
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| T |
3212072 |
agtactacttgctcataatctcatcttacacaccaggaccaagcatatggaaactgaccttttctttgtaagggaaaaggttttggc |
3211986 |
T |
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