View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_19 (Length: 412)
Name: NF8577_low_19
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 152 - 405
Target Start/End: Original strand, 34180155 - 34180407
Alignment:
| Q |
152 |
agtcgattttatgtaaataattcaatggatgagcctaggaaagtaattcaaagcataagaccttgaaccacatcgaatcattcaaatcagacaaatttgt |
251 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
34180155 |
agtcgattttatgtaaataatttaatggatgagcctaggaaagtaattcgaagcataagaccttga-ccacatcgaatcattcaaattagacaaatttgt |
34180253 |
T |
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| Q |
252 |
tatcatgctataatttttacaagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatgatttgtt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
34180254 |
tatcatgctataatttttacaagaataaccaagtgatttcttaggatatagtcactacagacgttttagtaaggagaaatgagacaaaagatgatttctt |
34180353 |
T |
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| Q |
352 |
aggatatatttccagcagacttttagttacgatgcatgttatatgatgtccatc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34180354 |
aggatatatttccagcagacttttagttacgatgcatgttatatgatgtgcatc |
34180407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 13962303 - 13962413
Alignment:
| Q |
152 |
agtcgattttatgtaaataattcaatggatgagcctaggaaagtaattcaaagcataagaccttgaaccacatcgaatcattcaaatcagacaaatttgt |
251 |
Q |
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|||||| |||||| |||||||||||||||||||| | || | | |||| ||||| ||| ||||||||||| || | |||| |||||||||||| ||||| |
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| T |
13962303 |
agtcgagtttatgcaaataattcaatggatgagcatgagagaatgattcgaagcacaaggccttgaaccacgtcaagtcatccaaatcagacaactttgt |
13962402 |
T |
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| Q |
252 |
tatcatgctat |
262 |
Q |
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||| |||||| |
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| T |
13962403 |
gatcgtgctat |
13962413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 2570318 - 2570429
Alignment:
| Q |
227 |
aatcattcaaatcagacaaatttgttatcatgctataatttttacaagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgagga |
326 |
Q |
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|||||| |||| |||||| ||||| |||||||||| |||||||||| || | | ||||||||| || |||||||||||| |||||||||||||| |
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| T |
2570318 |
aatcatccaaactagacaactttgtggtcatgctatactttttacaaggatgtcaacatgatttcttgaggtatagtcactacgaacgttttagtgaggc |
2570417 |
T |
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| Q |
327 |
gaaatgagacaa |
338 |
Q |
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|||||| ||||| |
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| T |
2570418 |
gaaatgggacaa |
2570429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 14614623 - 14614704
Alignment:
| Q |
265 |
tttttacaagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatgat |
346 |
Q |
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|||||| |||||||| |||||||||||| || ||||||||||| ||||||| | |||||| |||| ||||||||||||| |
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| T |
14614623 |
tttttataagaataattaagtgatttcttgaggcatagtcactacggacgtttcaatgaggaaaaataggacaaaagatgat |
14614704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 6135734 - 6135814
Alignment:
| Q |
265 |
tttttacaagaataaccaagtgatttcttaagatatagtcactacagacgttttagtgaggagaaatgagacaaaagatga |
345 |
Q |
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||||| ||||| ||| | |||||||||||| | ||||||||| ||| |||||| | ||| |||||||||||||| |||||| |
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| T |
6135734 |
tttttgcaagattaatctagtgatttcttagggtatagtcacaacaaacgtttcaatgacgagaaatgagacaagagatga |
6135814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 24455358 - 24455275
Alignment:
| Q |
154 |
tcgattttatgtaaataattcaatggatgagcctaggaaagtaattcaaagcataagaccttgaaccacatcgaatcattcaaa |
237 |
Q |
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|||| ||||||||| |||||||||||||| | | ||||||||||| ||||| ||| ||||||||||| || ||||| ||||| |
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| T |
24455358 |
tcgagtttatgtaactaattcaatggatggtcatgggaaagtaatttgaagcacaaggccttgaaccacgtcaaatcactcaaa |
24455275 |
T |
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