View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_20 (Length: 407)

Name: NF8577_low_20
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_20
NF8577_low_20
[»] chr5 (9 HSPs)
chr5 (108-278)||(26711285-26711455)
chr5 (108-278)||(26981022-26981192)
chr5 (286-407)||(26713549-26713670)
chr5 (286-407)||(26983288-26983409)
chr5 (11-111)||(26711142-26711242)
chr5 (11-111)||(26980879-26980979)
chr5 (175-230)||(39291620-39291676)
chr5 (208-246)||(26705613-26705651)
chr5 (208-246)||(26975346-26975384)
[»] chr4 (2 HSPs)
chr4 (182-230)||(13011002-13011050)
chr4 (175-247)||(20059848-20059922)
[»] chr7 (1 HSPs)
chr7 (175-235)||(5435329-5435390)
[»] chr1 (1 HSPs)
chr1 (175-230)||(3170092-3170149)
[»] chr2 (1 HSPs)
chr2 (182-230)||(21188976-21189025)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 26711285 - 26711455
Alignment:
Q  108 cattataactaggaatcagtctttgtgagtgccccgcgaggattttattcgcgatgaatagcatcgctaattcaaatttaaattgttttttagcaataag 207  Q
    |||||||||||||||||| |||| ||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  26711285 cattataactaggaatcactcttcgtgagtgcctcgtgagaattttattcgcgatgaatagcatcgctaattctaatttaaattgttttatagtaataag 26711384  T
Q  208 aaaacttttgaaatatttaataactcaacaatacaacaaattgttgccctctatcaatcaaataacctaaa 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26711385 aaaacttttgaaatatttaataactcaaaaatacaacaaattgttgccctctatcaatcaaataacctaaa 26711455  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 108 - 278
Target Start/End: Original strand, 26981022 - 26981192
Alignment:
Q  108 cattataactaggaatcagtctttgtgagtgccccgcgaggattttattcgcgatgaatagcatcgctaattcaaatttaaattgttttttagcaataag 207  Q
    |||||||||||||||||| |||| ||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  26981022 cattataactaggaatcactcttcgtgagtgcctcgtgagaattttattcgcgatgaatagcatcgctaattctaatttaaattgttttatagtaataag 26981121  T
Q  208 aaaacttttgaaatatttaataactcaacaatacaacaaattgttgccctctatcaatcaaataacctaaa 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26981122 aaaacttttgaaatatttaataactcaaaaatacaacaaattgttgccctctatcaatcaaataacctaaa 26981192  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 26713549 - 26713670
Alignment:
Q  286 aatattgttacattgaagcgacggagtggcgtggcagcctgccatggaatcaacgtcagccagcggcggcgaggggtcccccacacggggttatagggat 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |    
T  26713549 aatattgttacattgaagcgacggagtggagtggcagcctgccatggaatcaacgtcagccagcggcggcgagggttcccccacacgggtttataggtct 26713648  T
Q  386 tgctctttcttaaaattttcac 407  Q
    |||||| |||||||||||||||    
T  26713649 tgctctgtcttaaaattttcac 26713670  T

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Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 26983288 - 26983409
Alignment:
Q  286 aatattgttacattgaagcgacggagtggcgtggcagcctgccatggaatcaacgtcagccagcggcggcgaggggtcccccacacggggttatagggat 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |    
T  26983288 aatattgttacattgaagcgacggagtggagtggcagcctgccatggaatcaacgtcagccagcggcggcgagggttcccccacacgggtttataggtct 26983387  T
Q  386 tgctctttcttaaaattttcac 407  Q
    |||||| |||||||||||||||    
T  26983388 tgctctgtcttaaaattttcac 26983409  T

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Target: chr5; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 26711142 - 26711242
Alignment:
Q  11 aaataaagtaataattctaattgaaaaatgctatgtaaagcgaattaaacttcccgaatttatccccatttatatatatgtttgtaccgcataacaccat 110  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26711142 aaataaagtaataattttaattgaaaaatgttatgtaaagcgaattaaacttcccgaatttatccccatttatatatatgtttgtaccgcatgacaccat 26711241  T
Q  111 t 111  Q
    |    
T  26711242 t 26711242  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 26980879 - 26980979
Alignment:
Q  11 aaataaagtaataattctaattgaaaaatgctatgtaaagcgaattaaacttcccgaatttatccccatttatatatatgtttgtaccgcataacaccat 110  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26980879 aaataaagtaataattttaattgaaaaatgttatgtaaagcgaattaaacttcccgaatttatccccatttatatatatgtttgtaccgcatgacaccat 26980978  T
Q  111 t 111  Q
    |    
T  26980979 t 26980979  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 39291676 - 39291620
Alignment:
Q  175 taattcaaatttaaattgttttttagcaataag-aaaacttttgaaatatttaataa 230  Q
    |||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  39291676 taattctaatttaaattgttttctagtaataagaaaaacttttgaaatatttaataa 39291620  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 26705613 - 26705651
Alignment:
Q  208 aaaacttttgaaatatttaataactcaacaatacaacaa 246  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  26705613 aaaacttttgaaatatttaataactcaaaaatacaacaa 26705651  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 26975346 - 26975384
Alignment:
Q  208 aaaacttttgaaatatttaataactcaacaatacaacaa 246  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  26975346 aaaacttttgaaatatttaataactcaaaaatacaacaa 26975384  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 13011002 - 13011050
Alignment:
Q  182 aatttaaattgttttttagcaataagaaaacttttgaaatatttaataa 230  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  13011002 aatttaaattgttttctagtaataagaaaacttttgaaatatttaataa 13011050  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 20059848 - 20059922
Alignment:
Q  175 taattcaaatttaaattgtttttt-agcaataagaaaa-cttttgaaatatttaataactcaacaatacaacaaa 247  Q
    |||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||  ||| ||| |||||||    
T  20059848 taattctaatttaaattgtttttttaggaataagaaaaacttttgaaatatttaataagacaaaaattcaacaaa 20059922  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 5435329 - 5435390
Alignment:
Q  175 taattcaaatttaaattgttttttagcaataagaaaa-cttttgaaatatttaataactcaa 235  Q
    |||||| ||| ||||||||||| ||| || ||||||| ||||||||||||||||||||||||    
T  5435329 taattctaatataaattgttttctagaaaaaagaaaaacttttgaaatatttaataactcaa 5435390  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 3170149 - 3170092
Alignment:
Q  175 taattcaaatttaaattgttttttagcaataag--aaaacttttgaaatatttaataa 230  Q
    |||||| ||||||||||||||| ||| |||||   |||||||||||||||||||||||    
T  3170149 taattctaatttaaattgttttatagtaataactcaaaacttttgaaatatttaataa 3170092  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 21189025 - 21188976
Alignment:
Q  182 aatttaaattgttttttagcaataag-aaaacttttgaaatatttaataa 230  Q
    ||||||||||||||| ||| |||||| ||||| |||||||||||||||||    
T  21189025 aatttaaattgttttctagtaataagaaaaacgtttgaaatatttaataa 21188976  T

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