View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_21 (Length: 396)
Name: NF8577_low_21
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 378
Target Start/End: Complemental strand, 11658747 - 11658387
Alignment:
| Q |
26 |
ttccaatcatatcattaacatttcacaccaatttctcttatctctatctctcaaggtgtatacacctttaagatgttaaagaaacattt-ccttctataa |
124 |
Q |
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| T |
11658747 |
ttccaatcatatcatcaacatttcacaccaatctctcttatctct--ctctcaaggtgtatacacctttaagatgttaaagaaacattttccttatataa |
11658650 |
T |
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| Q |
125 |
tagatnnnnnnnnn---caatttgaaagtgttgttcagaatggaagaagagga------gagattacttgataaacaagtcatctccaatagctctaact |
215 |
Q |
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| T |
11658649 |
tagataaaaaaaaaaatcaatttgaaagtgttgttcagaatggaagaagaagaagaagagagattacttgataaacaagtcatctccaatagctctaact |
11658550 |
T |
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| Q |
216 |
aacttgccacataaaaatgtacaactgttatgtcagttagaaaggctatgatatagtgcagtaataattcaccaccattgtaacaaactcaactaatgaa |
315 |
Q |
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| T |
11658549 |
aacttgccacataaaaatgtacaactgttatgtcagttagaaaggctatgatatagtgcagtaataattcaccatcattgtaacaaactcaactaatgaa |
11658450 |
T |
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| Q |
316 |
taacagaatttctttcacaatgttcttcattttgtcttttaggattctcaattcactttctta |
378 |
Q |
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| T |
11658449 |
taacagaatttctttcacaatgttcttcattttctcttttaggattctcaattcactttctta |
11658387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 14932011 - 14931918
Alignment:
| Q |
285 |
caccaccattgtaacaaactcaactaatgaataacagaatttctttcacaatgttcttcattttgtcttttaggattctcaattcactttctta |
378 |
Q |
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| T |
14932011 |
caccatcattgtaacaaactcaattgatgaataacagaatttctttcactatgctctcaattttctcttctagaattctcaattcactttctta |
14931918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 14932146 - 14932053
Alignment:
| Q |
178 |
attacttgataaacaagtcatctccaatagctctaactaacttgccacataaaaatgtacaactgttatgtcagttagaaaggctatgatatag |
271 |
Q |
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| T |
14932146 |
attacttgaggaacaagttatctcccataactcgaactaacttgccacataagcatgtacaactgttatgacaattagaaaggccctgatatag |
14932053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 15584154 - 15584042
Alignment:
| Q |
158 |
agaatggaagaagaggagagattacttgataaacaagtcatctccaatagctctaactaacttgccacataaaaatgtacaactgttatgtcagttagaa |
257 |
Q |
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|||||| || |||| |||||||||||||| |||||||||||| | |||||||||||| ||||| ||||||| ||||| || ||||| ||||||||| |
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| T |
15584154 |
agaatgaaaaaagaagagagattacttgaggaacaagtcatctaccatagctctaacttacttgtcacataagcttgtacttctattatgacagttagaa |
15584055 |
T |
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| Q |
258 |
aggctatgatata |
270 |
Q |
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||||||| ||||| |
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| T |
15584054 |
aggctatcatata |
15584042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 15583979 - 15583930
Alignment:
| Q |
288 |
caccattgtaacaaactcaactaatgaataacagaatttctttcacaatg |
337 |
Q |
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| T |
15583979 |
caccactgtaacaaactcaattgatgaataacataatttcttgcacaatg |
15583930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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