View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_24 (Length: 362)
Name: NF8577_low_24
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 40850887 - 40851221
Alignment:
| Q |
20 |
gaaccctagatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaatgc |
119 |
Q |
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| T |
40850887 |
gaactctagatgcaaaagctggaatgtaatgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgc |
40850986 |
T |
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| Q |
120 |
ctgtcattgtgaaatttagagaatcttatatgtatgcacaacattagagtttaacatagaatttgcaattcatatttgtaggtaatgtgaa-----atta |
214 |
Q |
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| T |
40850987 |
ctgtcattgtgaaatttagagaatct--tatgtatgcacaacattagagtttaacataaaatttgcaatttagagtt-tatgtaatgtgaatcaagttta |
40851083 |
T |
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| Q |
215 |
accacttaatacaagtgaataattcaataaataaagtaatcttttcaaatgctattgtgatattattttctttaatcacttaacagatcaagttacctgc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40851084 |
accacttaatacaagtgaataattcaataaataaagtaatcatttcaaatattattgtgatattattttctttattcacttaacagatcaagttacctgc |
40851183 |
T |
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| Q |
315 |
aagaaatcatatagatcattgctgacaccgtcttcatc |
352 |
Q |
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| T |
40851184 |
aagaaatcatatagatcattgctaacaccgtcttcatc |
40851221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 40844795 - 40844904
Alignment:
| Q |
20 |
gaaccctagatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaatgc |
119 |
Q |
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| T |
40844795 |
gaactctagatgcaaaagctggaatgtaatgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgc |
40844894 |
T |
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| Q |
120 |
ctgtcattgt |
129 |
Q |
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|||||||||| |
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| T |
40844895 |
ctgtcattgt |
40844904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 40840427 - 40840528
Alignment:
| Q |
28 |
gatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaatgcctgtcatt |
127 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| || |||||||||||||||||| ||||||| |||| ||| |
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| T |
40840427 |
gatgcaaaagctggaacgtaatgtccagcgtatgactctccggtaatataaaagtcattctcagcgaactgagggtgttccttaaaaaatgtctgttatt |
40840526 |
T |
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| Q |
128 |
gt |
129 |
Q |
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|| |
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| T |
40840527 |
gt |
40840528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 40840686 - 40840778
Alignment:
| Q |
258 |
ttcaaatgctattgtgatattattttctttaatcacttaacagatcaagttacctgcaagaaatcatatagatcattgctgacaccgtcttcatc |
352 |
Q |
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| T |
40840686 |
ttcatatgttattttgatattatattctttaatcacttaacaaatcaagttacctgcaagaaa--atatagatcattgctaacaccgtcttcatc |
40840778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 21125281 - 21125185
Alignment:
| Q |
20 |
gaaccctagatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaa |
116 |
Q |
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| T |
21125281 |
gaaccctagatgcaagagcaggaacatagtgtccagcatatgattctccagtaatatagaagtcattcttgatgaacttagggtgctgcttgaaaaa |
21125185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 21145371 - 21145275
Alignment:
| Q |
20 |
gaaccctagatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaa |
116 |
Q |
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| T |
21145371 |
gaaccctagatgcaagagcaggaacatagtgtccagcatatgattctccagtaatatagaagtcattcttgatgaacttagggtgctgcttgaaaaa |
21145275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 21150253 - 21150212
Alignment:
| Q |
49 |
tgtccagcgtatgattctccagtaatataaaaatcattctta |
90 |
Q |
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| T |
21150253 |
tgtccagcgtatgattctccagtaatataaaagtcgttctta |
21150212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 21115230 - 21115142
Alignment:
| Q |
28 |
gatgcaaaagctggaatgtaatgtccagcgtatgattctccagtaatataaaaatcattcttagtgaactgagggtgttccttgaaaaa |
116 |
Q |
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||||||| ||||||||| || ||||| || ||||||||||| || |||||||| ||||| ||| ||||| |||||| |||| |||||| |
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| T |
21115230 |
gatgcaagagctggaatatagtgtcctgcatatgattctccggtgatataaaagtcatttttaacgaactcagggtgctcctcgaaaaa |
21115142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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