View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_26 (Length: 354)
Name: NF8577_low_26
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 14664743 - 14664429
Alignment:
| Q |
16 |
agcagatagatgaggatagttgcatgttgcatcatgtacagatcagaaagagaaccaacaaatatcggaattgtgagaaaaaagagaaatcactcggtcc |
115 |
Q |
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| T |
14664743 |
agcagatagatgaggatagttgcatgttgcatcatgtacagatcagaaagagaaccaacaaatatcggaattgtgagaaaaaagagaaatcactcagtcc |
14664644 |
T |
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| Q |
116 |
ctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaaacttcgttactagacgtctttagtctattgtttgcgattattattgt |
215 |
Q |
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| T |
14664643 |
ctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaaacttcgttactagacgtctttagtctattgtttgcgattatta---- |
14664548 |
T |
|
| Q |
216 |
ttcttttctctttcgaagctgtttgttgttctatcaataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat |
315 |
Q |
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| T |
14664547 |
ttcttttctctttcgaagctgtttgttgttctatcgataatctttaattcctcaactttagttttacttatgcattaatgaccactatgaccactaccat |
14664448 |
T |
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| Q |
316 |
tatcattgattgtttctag |
334 |
Q |
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| T |
14664447 |
tatcattgattgtttctag |
14664429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 14654691 - 14654638
Alignment:
| Q |
281 |
acttatgcattaatgaccactatgaccactaccattatcattgattgtttctag |
334 |
Q |
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| T |
14654691 |
acttatgcattaatgaccactatgaccactaccattatcattgattgtttctag |
14654638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 8979048 - 8979088
Alignment:
| Q |
255 |
atctttaattcctcaactttagttttacttatgcattaatg |
295 |
Q |
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| T |
8979048 |
atctttaattcttcaactttagttttacctatgcattaatg |
8979088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 8995547 - 8995596
Alignment:
| Q |
253 |
taatctttaattcctcaactttagttttacttatgcattaatgaccacta |
302 |
Q |
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| T |
8995547 |
taatcttcaattcttcaactttagttttatctatgcattaatggccacta |
8995596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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