View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_27 (Length: 351)
Name: NF8577_low_27
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 3322910 - 3322579
Alignment:
| Q |
1 |
agacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaagaaacca |
100 |
Q |
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| T |
3322910 |
agacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaagaaacca |
3322811 |
T |
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| Q |
101 |
aattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaaccattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3322810 |
aattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaaccattag |
3322711 |
T |
|
| Q |
201 |
agaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatggcatgtgcc |
300 |
Q |
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| T |
3322710 |
agaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatggcatgtgcc |
3322611 |
T |
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| Q |
301 |
ttctgctttacctgattatgatgattttattg |
332 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
3322610 |
ttctactttacctgattatgatgattttattg |
3322579 |
T |
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