View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_28 (Length: 345)
Name: NF8577_low_28
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 90 - 327
Target Start/End: Complemental strand, 8829860 - 8829623
Alignment:
| Q |
90 |
ttgaagtttgagttttgagtgaattacctgaatttggtcaccaatattgacaatgaaggtattaggaacagggttaatagttacccatttaccattctta |
189 |
Q |
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| T |
8829860 |
ttgaagtttgagttttgactgaattacctgaatttggtcaccaatattgacaatgaaggtattaggaacagggttaatagttacccatttaccatcctta |
8829761 |
T |
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| Q |
190 |
aggacttgcaaaccagccacatcattttgcaacaaaatggtaatgacatttgggtcagcatgtgctggcaaaccataagttaggtctggttcaggacatg |
289 |
Q |
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| T |
8829760 |
aggacttgcaaaccagccacatcattttgcaacaaaatggtaatgacatttgggtcagcatgtgctggcaaaccataagttaggtctggttcaggacatg |
8829661 |
T |
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| Q |
290 |
gagggtagtagttaatagccatgtgttgtccatgtttg |
327 |
Q |
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| T |
8829660 |
gagggtagtagttaatagccatgtgttgtccatgtttg |
8829623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 8829917 - 8829885
Alignment:
| Q |
33 |
gggcagcgttcaaccaatatggtcacctatttt |
65 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
8829917 |
gggcagcgttcaacgaatatggtcacctatttt |
8829885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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