View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_33 (Length: 314)
Name: NF8577_low_33
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 22061833 - 22061533
Alignment:
| Q |
14 |
ataagaatagtaatcagttacatctaagggatgatgattttgtcaaagatgttagcaccattttggatataattaa----tagggttcgccgacaatcca |
109 |
Q |
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| T |
22061833 |
ataagaatagtaatcagttacatctaagggatgatcattttgtcaaagatgttaacaccattttggatataattaacgaatagggttcgccgacaatcca |
22061734 |
T |
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| Q |
110 |
acaccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttgaagcgaagaaggaaggattatcggagt |
209 |
Q |
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| T |
22061733 |
acaccgaaatccatcgccggcgagtgaacctttggtattatcgtcagaaacaattggccggatttaggtgttggagcgaagaaggaaggaatatcggagt |
22061634 |
T |
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| Q |
210 |
ggaggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatttctggggatgatgatgatgtc |
309 |
Q |
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| T |
22061633 |
ggaggagtaacaggagcatgaattggaggttttgctgataaactgatcagagatggagatcgctggtgaagattgtatttccggggatgatgatgatgtc |
22061534 |
T |
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| Q |
310 |
c |
310 |
Q |
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| T |
22061533 |
c |
22061533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 32904264 - 32904337
Alignment:
| Q |
14 |
ataagaatagtaatcagttacatctaagggatgatgattttgtcaaagatgttagcaccattttggatataatt |
87 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32904264 |
ataagaatagtagtcagttacatttaagggatgatggttttgtcaaagatgttaagaccattttggatataatt |
32904337 |
T |
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