View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_34 (Length: 312)

Name: NF8577_low_34
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_34
NF8577_low_34
[»] chr5 (6 HSPs)
chr5 (18-293)||(29021506-29021781)
chr5 (20-292)||(28673346-28673618)
chr5 (20-292)||(28695596-28695868)
chr5 (105-201)||(28662717-28662815)
chr5 (209-265)||(28662057-28662113)
chr5 (70-125)||(28532571-28532626)
[»] chr8 (4 HSPs)
chr8 (73-289)||(18314714-18314929)
chr8 (73-201)||(18318807-18318935)
chr8 (73-187)||(32151732-32151846)
chr8 (238-274)||(32151897-32151933)
[»] chr4 (10 HSPs)
chr4 (76-207)||(532587-532718)
chr4 (238-283)||(2373556-2373601)
chr4 (68-293)||(8186431-8186656)
chr4 (226-283)||(12124509-12124566)
chr4 (241-283)||(2367990-2368032)
chr4 (241-283)||(5106641-5106683)
chr4 (239-280)||(2391349-2391390)
chr4 (241-283)||(2363162-2363204)
chr4 (241-283)||(2518912-2518954)
chr4 (224-268)||(6007324-6007368)
[»] chr3 (1 HSPs)
chr3 (70-169)||(13469872-13469968)
[»] chr6 (1 HSPs)
chr6 (68-187)||(9411886-9412005)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 29021506 - 29021781
Alignment:
Q  18 gtaagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattgg 117  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29021506 gtaagcagaagcaatgcaggcaatggttattctaggacaaaaaatgacaataacttcttcgagaagcttacagttgtttataaagtggaaaagtgattgg 29021605  T
Q  118 tcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttga 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021606 tcgttgatatagcaatgacgagagagatcaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttga 29021705  T
Q  218 tctctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctatt 293  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  29021706 tctttacaggataactaagatcgagttcttcgagcaaagggaagcaatcagcaataagaaagagatgagtgctatt 29021781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 28673618 - 28673346
Alignment:
Q  20 aagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtc 119  Q
    ||||||||||||||||||  ||| ||| |||| ||||||||| |||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28673618 aagcagaagcaatgcaggagatggttaatctatgacaagaaaagactataacctcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtc 28673519  T
Q  120 gttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatc 219  Q
    |||||| |||  |||| ||||||||  |||||||| |||||| ||||||| ||||||||||||||| | ||||||| ||||  ||||| | ||| ||| |    
T  28673518 gttgatgtagtgatgatgagagagattaaccttgcagagtttgaaaagtggcaatgaaatagcctcaacaccatcgtgtaaactactgtggtagatgaac 28673419  T
Q  220 tctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctat 292  Q
    ||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  28673418 tctccgggatcactaagatcgagttcttcgagcaaagggaagcaatcagcaatgaagaagagatcggtgctat 28673346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 28695868 - 28695596
Alignment:
Q  20 aagcagaagcaatgcaggcaatgcttattctaggacaagaaatgacagtaacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtc 119  Q
    ||||||||||||||||||  ||| ||| |||| ||||||||| |||  |||| |||||||||||||| ||||||||||||||||||||||||| |||| |    
T  28695868 aagcagaagcaatgcaggagatggttaatctatgacaagaaaagactataacctcttcgagaagcttgcagttgtttatcaagtggaaaagtggttggcc 28695769  T
Q  120 gttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatc 219  Q
    |||||| |||  |||||||||||||  |||||||| |||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||| | ||| ||| |    
T  28695768 gttgatgtagtgatgacgagagagattaaccttgcagagtttgaaaagtggcaatgaaatagcctctacaccatcgtgtaagctactgtggtagatgaac 28695669  T
Q  220 tctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagatgagtgctat 292  Q
    |||   |||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  28695668 tctctgggatcactaatatcgagttcttcgggcaaagggaagcaatcagcaatgaagaagagatcagtgctat 28695596  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 28662815 - 28662717
Alignment:
Q  105 gaaaagtgattggtcgttgatatagcaatgacgagagagaac--aaccttgcggagtttaaaaagtgacaatgaaatagcctctaaaccatcgagtaag 201  Q
    ||||||||||||||||||||| ||   |||||||||||||    |||||| | |||||| |||||||||||||||||||| ||||||||||||||||||    
T  28662815 gaaaagtgattggtcgttgatgtattgatgacgagagagagattaaccttccagagtttgaaaagtgacaatgaaatagcatctaaaccatcgagtaag 28662717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 28662113 - 28662057
Alignment:
Q  209 gatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaat 265  Q
    ||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||||    
T  28662113 gatagttgaactcttcgggatcactaagatcgagttcttcgagcaaagggaagcaat 28662057  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 28532571 - 28532626
Alignment:
Q  70 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgat 125  Q
    ||||||| |||||||||||||||| | | |||||||||||||||||||| ||||||    
T  28532571 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 28532626  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 289
Target Start/End: Complemental strand, 18314929 - 18314714
Alignment:
Q  73 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 172  Q
    |||||||||||||||||||| || | |||||||||||| ||||| |||||||| ||| |||||  || || |  |||||| |||||||| |||||||  |    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtttgaaaagtgtga 18314830  T
Q  173 atgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatcagcaat 272  Q
     ||||| | ||||||  |||| ||||||| |     |||  || | ||||   || |||||||| || |||||||||||||||||||| |||||||||||    
T  18314829 -tgaaagaacctctattccattgagtaagctttcatgattttttaactctttggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaat 18314731  T
Q  273 gaagaagagatgagtgc 289  Q
    || |||||||| |||||    
T  18314730 gaggaagagatcagtgc 18314714  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 18318935 - 18318807
Alignment:
Q  73 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 172  Q
    |||||||||||||| ||||| || | |||||||| ||| ||||| ||| ||||||||  ||||| || |||| ||||||| ||||||||  ||||||  |    
T  18318935 tcttcgagaagcttccagttcttgaacaagtggataagcgattgatcggtgatatagtgatgaccagtgagatcaacctttcggagtttggaaagtgcta 18318836  T
Q  173 atgaaatagcctctaaaccatcgagtaag 201  Q
    | |||| | ||||||  ||||||||||||    
T  18318835 aagaaagaacctctactccatcgagtaag 18318807  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 32151732 - 32151846
Alignment:
Q  73 tcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgaca 172  Q
    |||||||||||||| |||||||| | |||||||||||| ||||| || || ||||||  |||||  | ||||  |||||| | ||||||| |||||| |     
T  32151732 tcttcgagaagcttccagttgttgaacaagtggaaaagcgattgatctttaatatagtgatgacttgtgagattaaccttccagagtttataaagtgccg 32151831  T
Q  173 atgaaatagcctcta 187  Q
     ||||| ||||||||    
T  32151832 ttgaaagagcctcta 32151846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 32151897 - 32151933
Alignment:
Q  238 tcaagttcttcgagcaaagggaagcaatcagcaatga 274  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  32151897 tcaagttcttcgagcaaagggaaacaatcggcaatga 32151933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 532587 - 532718
Alignment:
Q  76 tcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtgacaatg 175  Q
    |||||||||||||| || || | |||||||||||| |||||||||||||| |||  ||||  ||| |||  ||||||||||||||| |||||||| ||||    
T  532587 tcgagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtgataatg 532686  T
Q  176 aaatagcctctaaaccatcgagtaagttactg 207  Q
    ||| || ||| | ||||| ||| ||| |||||    
T  532687 aaagagtctccacaccatggagaaagctactg 532718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 2373601 - 2373556
Alignment:
Q  238 tcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2373601 tcaagttcttcgagcaaagggaaacaatcagcaatgaagaagagat 2373556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 8186656 - 8186431
Alignment:
Q  68 taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag 167  Q
    |||| ||||||||| ||||||| || |||| |||||| |||||  ||| |||||||||||||  ||||  ||| |||  ||||||||| ||||| |||||    
T  8186656 taacctcttcgagatgcttacaattctttaacaagtgaaaaagcaatttgtcgttgatatagttatgattagatagattaaccttgcgaagtttgaaaag 8186557  T
Q  168 tgacaatgaaatagcctctaaaccatcgagtaagttactgcgatagttgatctctacaggataactaagatcaagttcttcgagcaaagggaagcaatca 267  Q
    || |||||||| |||||| |  ||||| |  ||| ||||| ||| ||||| ||||  ||| | ||| ||||| |||||||| || ||||| || |||||     
T  8186556 tgccaatgaaagagcctcaactccatcaaagaagatactgagattgttgaactctttagggttactgagatcgagttcttctaggaaaggaaaacaatcg 8186457  T
Q  268 gcaatgaagaagagatgagtgctatt 293  Q
    || |||| |||||  | |||||||||    
T  8186456 gcgatgaggaagatgtcagtgctatt 8186431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 12124509 - 12124566
Alignment:
Q  226 ggataactaagatcaagttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    |||||||| || ||||||||||| || |||||||| ||||||||||||||||||||||    
T  12124509 ggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaagagat 12124566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 2368032 - 2367990
Alignment:
Q  241 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  2368032 agttcttcgagtaaagggaaacaatcagcaatgaagaagagat 2367990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 5106683 - 5106641
Alignment:
Q  241 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  5106683 agttcttcgagtaaagggaaacaatcagcaatgaagaagagat 5106641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 2391390 - 2391349
Alignment:
Q  239 caagttcttcgagcaaagggaagcaatcagcaatgaagaaga 280  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  2391390 caagttcttcgagtaaagggaagcaatcaacaatgaagaaga 2391349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 2363204 - 2363162
Alignment:
Q  241 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||    
T  2363204 agttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 2518912 - 2518954
Alignment:
Q  241 agttcttcgagcaaagggaagcaatcagcaatgaagaagagat 283  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  2518912 agttctttgagtaaagggaaacaatcagcaatgaagaagagat 2518954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 6007324 - 6007368
Alignment:
Q  224 caggataactaagatcaagttcttcgagcaaagggaagcaatcag 268  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||    
T  6007324 cagggtaactaagatcaagttcttcgagtaaaggaaaacaatcag 6007368  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 13469968 - 13469872
Alignment:
Q  70 acttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaagtg 169  Q
    |||||||||||||||||||||||||  |  ||||||||||||||| ||| |||  ||||| ||  || ||| |||  |||||||||||||||||||||||    
T  13469968 acttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtt--tataggaa-aactagaaagattaaccttgcggagtttaaaaagtg 13469872  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 9411886 - 9412005
Alignment:
Q  68 taacttcttcgagaagcttacagttgtttatcaagtggaaaagtgattggtcgttgatatagcaatgacgagagagaacaaccttgcggagtttaaaaag 167  Q
    |||| |||| ||||||||||||||| || | ||||| ||| ||||||  ||||||||| |||  ||||| |||||||  || ||||  |||||| |||||    
T  9411886 taacctcttggagaagcttacagttcttaaacaagttgaagagtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaag 9411985  T
Q  168 tgacaatgaaatagcctcta 187  Q
    || |||||||| || |||||    
T  9411986 tgtcaatgaaagagtctcta 9412005  T

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