View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_35 (Length: 312)
Name: NF8577_low_35
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 53063682 - 53063970
Alignment:
| Q |
18 |
ctcaagagttactaattgttgttggtcataatctacttattgttagaaagaattgaaggaggttgagacgaataaacataatagttgcaacgagacatgg |
117 |
Q |
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| T |
53063682 |
ctcaagagttactaattgttgttggtcataatctacttattgttagaaagaattgaaggaggttgagacgaataaacataatagttgcaacgagacatgg |
53063781 |
T |
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| Q |
118 |
tagtttgtaagaatttttagttatcaacagaac--annnnnnnnnnnnngaaggaacagaaaaccattacatgaatatagttaatcaacacaaaattctt |
215 |
Q |
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| T |
53063782 |
tagtttgtaagaaattttagttatcaacagaactttttttttttttttcgaaggaacagaaaaccattacatgaatatagttaatcaacacaaaattctt |
53063881 |
T |
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| Q |
216 |
cttttgtaaaacnnnnnnntacaattcttttttgatttctttactatttctcttgttgtataaaggagtcacaaatagtcaatttcatt |
304 |
Q |
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| T |
53063882 |
cttttgtaaaacaaaaaaatacaattcttttttgatttctttactatttctcttgttgtataaagcagtcacaaatagtcaatttcatt |
53063970 |
T |
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