View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_37 (Length: 306)
Name: NF8577_low_37
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 2738166 - 2737881
Alignment:
| Q |
8 |
ttggtgttcttggtatgtgtaacttgttgtagaatccttctcctcctattggcgaatcatcaccatgatgat---------gaagatttccggtgaagca |
98 |
Q |
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| T |
2738166 |
ttggtgttcttggtatgtgtaacttgttgtagaatccttctcctcctattggcgaatcatcaccatgatgattatgatgatgaagatttccggtgaagca |
2738067 |
T |
|
| Q |
99 |
acatatcgaatttttcaacttctcctttatagatgattgtctaggaataacatcgtccattactaacgtgcagacagacactggaatttggttaacgatg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2738066 |
acatatcgaatttttcaacttctcctttatagatgattgtctaggaataacatcgtccattactaacctgcagacagacactggaatttggttaacgatg |
2737967 |
T |
|
| Q |
199 |
aattaatgaaactcatatgttagtgatgaggttgaaggagtgtggattttataataagatgagggcttaaggaggaaatgaaatttg |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2737966 |
aattaatgaaactcatatgtt-gtgatgaggttgaaggagtgtggattttataataagatgagggcttaaggaggaaatgaaatttg |
2737881 |
T |
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