View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_39 (Length: 299)
Name: NF8577_low_39
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 29142607 - 29142347
Alignment:
| Q |
13 |
cacacacgtttcttatatatgtttcatagttagtaatgaataagaaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagct |
112 |
Q |
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| T |
29142607 |
cacacacgtttcttttatatgtttcatagttagtaatgaataagaaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagct |
29142508 |
T |
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| Q |
113 |
gttagagtgcctccaaaagccatgaagtgatcaacacaccttctactgcctcagtgaaaatgtttccttttgtattgacaataaatttaccttcaatttt |
212 |
Q |
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| T |
29142507 |
gttagagtgcctccaaaagccatgaagtgatcaacacaccttctactgcctcagtgaaaatgtttccttttgtattgacaataaagttaccttcaatttt |
29142408 |
T |
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| Q |
213 |
ctgtgatgacaaataaataactaaatatatggaaattgtgagtgcatgtatgatctaatat |
273 |
Q |
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| T |
29142407 |
ctgtgatgacaaataaataactaaatatatggaaattgtgagtgcatgtatgatctaatat |
29142347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 29569394 - 29569486
Alignment:
| Q |
57 |
aaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagctgttagagtgcctccaaaagcc--atgaagtgatcaac |
147 |
Q |
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| T |
29569394 |
aaatattttgagaaagaaaactgacaaaacttgtgatgacattgtttgtttcagctattagaatcccaccgaaagccatatgaagtgatcaac |
29569486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 29569622 - 29569655
Alignment:
| Q |
240 |
tatggaaattgtgagtgcatgtatgatctaatat |
273 |
Q |
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| T |
29569622 |
tatggaaattgttagtgcatgtatgatctaatat |
29569655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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