View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_4 (Length: 728)

Name: NF8577_low_4
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_4
NF8577_low_4
[»] chr1 (36 HSPs)
chr1 (21-713)||(5292976-5293671)
chr1 (202-372)||(5181047-5181218)
chr1 (199-309)||(35069862-35069973)
chr1 (234-376)||(39616332-39616476)
chr1 (199-330)||(44615427-44615559)
chr1 (199-330)||(44793010-44793142)
chr1 (199-300)||(23058471-23058573)
chr1 (199-372)||(29936421-29936601)
chr1 (127-192)||(48125763-48125828)
chr1 (199-375)||(49250680-49250857)
chr1 (204-323)||(10778526-10778646)
chr1 (199-372)||(12495015-12495189)
chr1 (287-373)||(13020687-13020773)
chr1 (199-372)||(36187130-36187304)
chr1 (115-192)||(36421698-36421775)
chr1 (205-374)||(16408953-16409122)
chr1 (199-346)||(41476888-41477036)
chr1 (317-372)||(3627907-3627962)
chr1 (256-334)||(13798300-13798379)
chr1 (201-315)||(34085242-34085357)
chr1 (287-374)||(50426563-50426650)
chr1 (199-341)||(51421863-51422006)
chr1 (208-336)||(13692645-13692772)
chr1 (204-369)||(19572425-19572591)
chr1 (115-172)||(2581505-2581561)
chr1 (199-264)||(10450078-10450143)
chr1 (208-320)||(19003628-19003741)
chr1 (115-191)||(23719535-23719610)
chr1 (199-330)||(29871237-29871369)
chr1 (116-192)||(39219191-39219267)
chr1 (129-192)||(33293600-33293663)
chr1 (22-60)||(14890991-14891029)
chr1 (115-192)||(8880380-8880457)
chr1 (199-272)||(12718783-12718856)
chr1 (199-272)||(16237315-16237388)
chr1 (132-165)||(47644966-47644999)
[»] chr8 (23 HSPs)
chr8 (199-372)||(27777108-27777282)
chr8 (115-302)||(29918538-29918715)
chr8 (198-377)||(43113531-43113711)
chr8 (204-377)||(27932422-27932597)
chr8 (199-331)||(15173831-15173964)
chr8 (276-372)||(11254925-11255021)
chr8 (201-372)||(40248281-40248453)
chr8 (199-300)||(40789593-40789695)
chr8 (199-368)||(14687403-14687573)
chr8 (199-332)||(20399596-20399730)
chr8 (281-373)||(2075743-2075835)
chr8 (115-191)||(5793516-5793592)
chr8 (199-334)||(14155536-14155672)
chr8 (205-372)||(45236075-45236243)
chr8 (218-328)||(6388470-6388581)
chr8 (199-272)||(17469259-17469332)
chr8 (198-283)||(30904049-30904134)
chr8 (288-368)||(17084027-17084107)
chr8 (202-320)||(15068550-15068668)
chr8 (129-192)||(17108321-17108384)
chr8 (199-300)||(2183588-2183690)
chr8 (204-320)||(27056517-27056634)
chr8 (135-184)||(36274993-36275042)
[»] chr5 (31 HSPs)
chr5 (201-368)||(29245866-29246034)
chr5 (135-372)||(16311204-16311431)
chr5 (199-272)||(12712569-12712642)
chr5 (199-272)||(12773833-12773906)
chr5 (115-333)||(29664902-29665107)
chr5 (199-320)||(28568984-28569106)
chr5 (199-331)||(2681220-2681353)
chr5 (199-374)||(6155829-6156003)
chr5 (199-266)||(12250974-12251041)
chr5 (201-363)||(12866471-12866634)
chr5 (199-372)||(4920830-4921004)
chr5 (203-300)||(23044974-23045072)
chr5 (202-272)||(10822538-10822608)
chr5 (201-362)||(12834495-12834657)
chr5 (201-373)||(15890213-15890385)
chr5 (136-191)||(18451967-18452022)
chr5 (281-376)||(40517893-40517988)
chr5 (199-332)||(5908639-5908773)
chr5 (198-264)||(38006489-38006555)
chr5 (135-192)||(12457468-12457525)
chr5 (130-192)||(16366528-16366591)
chr5 (281-372)||(17853204-17853295)
chr5 (281-372)||(35311900-35311991)
chr5 (139-205)||(40187723-40187790)
chr5 (281-367)||(6092445-6092531)
chr5 (22-60)||(16311497-16311535)
chr5 (114-172)||(39887202-39887260)
chr5 (199-360)||(40187580-40187741)
chr5 (199-268)||(17153173-17153242)
chr5 (199-368)||(22694817-22694986)
chr5 (199-272)||(32574950-32575023)
[»] chr7 (30 HSPs)
chr7 (235-372)||(37218050-37218188)
chr7 (198-374)||(45885673-45885850)
chr7 (199-300)||(27063147-27063249)
chr7 (201-371)||(10072477-10072648)
chr7 (199-373)||(12980386-12980561)
chr7 (204-373)||(3226855-3227025)
chr7 (198-372)||(30650639-30650814)
chr7 (199-372)||(3157092-3157265)
chr7 (199-272)||(18683983-18684056)
chr7 (199-267)||(32546201-32546269)
chr7 (198-375)||(5377093-5377271)
chr7 (198-272)||(25979928-25980002)
chr7 (199-272)||(3920547-3920620)
chr7 (204-320)||(33841092-33841208)
chr7 (115-192)||(36251010-36251087)
chr7 (205-320)||(8906551-8906667)
chr7 (278-373)||(37182363-37182458)
chr7 (278-377)||(39317084-39317183)
chr7 (129-265)||(4101492-4101617)
chr7 (199-332)||(7780017-7780151)
chr7 (287-332)||(23475225-23475270)
chr7 (127-184)||(31345474-31345531)
chr7 (284-332)||(19439972-19440020)
chr7 (287-375)||(24753261-24753349)
chr7 (115-191)||(43550497-43550573)
chr7 (199-266)||(22973397-22973464)
chr7 (203-341)||(38152900-38153038)
chr7 (199-363)||(16079022-16079187)
chr7 (287-332)||(23457157-23457202)
chr7 (287-372)||(23533526-23533611)
[»] scaffold0184 (1 HSPs)
scaffold0184 (199-306)||(2973-3081)
[»] chr4 (44 HSPs)
chr4 (207-320)||(31415894-31416008)
chr4 (199-306)||(14605902-14606010)
chr4 (127-372)||(12075543-12075777)
chr4 (199-372)||(6382183-6382357)
chr4 (199-376)||(11122776-11122954)
chr4 (199-372)||(19882967-19883141)
chr4 (199-372)||(47550264-47550438)
chr4 (115-192)||(36919060-36919137)
chr4 (199-374)||(11028083-11028259)
chr4 (199-373)||(26564841-26565016)
chr4 (236-373)||(7334107-7334244)
chr4 (115-192)||(7334266-7334341)
chr4 (199-372)||(5902531-5902699)
chr4 (199-272)||(29527822-29527895)
chr4 (199-268)||(30266346-30266415)
chr4 (199-268)||(30285773-30285842)
chr4 (115-192)||(42907824-42907900)
chr4 (213-333)||(17112972-17113092)
chr4 (217-315)||(43309511-43309610)
chr4 (129-373)||(4741127-4741359)
chr4 (281-372)||(25265080-25265167)
chr4 (199-272)||(10574431-10574504)
chr4 (199-272)||(31782623-31782696)
chr4 (199-267)||(21544589-21544657)
chr4 (288-372)||(42299888-42299972)
chr4 (115-190)||(21714058-21714133)
chr4 (221-331)||(30672993-30673104)
chr4 (136-191)||(36306743-36306798)
chr4 (199-266)||(45065259-45065326)
chr4 (132-190)||(24474524-24474582)
chr4 (117-191)||(25265229-25265302)
chr4 (115-153)||(39665720-39665758)
chr4 (144-190)||(43553412-43553458)
chr4 (259-331)||(39086227-39086300)
chr4 (199-264)||(47103748-47103813)
chr4 (199-375)||(7985034-7985206)
chr4 (214-266)||(15733544-15733596)
chr4 (199-334)||(25941148-25941284)
chr4 (276-372)||(36919211-36919307)
chr4 (115-197)||(30034611-30034693)
chr4 (201-313)||(10302096-10302209)
chr4 (115-192)||(21956895-21956971)
chr4 (115-192)||(25298914-25298990)
chr4 (281-322)||(43553539-43553580)
[»] scaffold0005 (1 HSPs)
scaffold0005 (199-306)||(211368-211476)
[»] chr2 (26 HSPs)
chr2 (202-377)||(37106700-37106876)
chr2 (199-368)||(24414046-24414216)
chr2 (199-375)||(30846951-30847128)
chr2 (199-267)||(3547171-3547239)
chr2 (199-300)||(43371558-43371660)
chr2 (202-362)||(37472679-37472840)
chr2 (199-272)||(38342530-38342603)
chr2 (281-372)||(9632474-9632565)
chr2 (199-266)||(18485653-18485720)
chr2 (199-372)||(31942095-31942270)
chr2 (248-373)||(12341654-12341780)
chr2 (115-177)||(13531881-13531943)
chr2 (202-272)||(24051635-24051705)
chr2 (199-300)||(30978932-30979032)
chr2 (70-191)||(13954623-13954753)
chr2 (70-191)||(14095830-14095960)
chr2 (199-264)||(14331532-14331597)
chr2 (199-244)||(30696929-30696974)
chr2 (115-183)||(25210309-25210377)
chr2 (281-372)||(13830823-13830914)
chr2 (199-265)||(44057887-44057954)
chr2 (115-153)||(31600887-31600925)
chr2 (321-371)||(34544233-34544283)
chr2 (129-191)||(37309812-37309874)
chr2 (287-372)||(6027811-6027896)
chr2 (287-371)||(18106029-18106114)
[»] chr3 (25 HSPs)
chr3 (199-373)||(39655182-39655357)
chr3 (199-341)||(54317148-54317291)
chr3 (199-375)||(23546855-23547026)
chr3 (199-372)||(42758378-42758552)
chr3 (199-374)||(29284340-29284516)
chr3 (198-321)||(34119659-34119783)
chr3 (281-368)||(23580914-23581001)
chr3 (199-372)||(4015954-4016128)
chr3 (203-300)||(35687473-35687571)
chr3 (198-373)||(4557214-4557390)
chr3 (199-300)||(19111738-19111840)
chr3 (281-375)||(22535748-22535842)
chr3 (276-334)||(42243469-42243527)
chr3 (287-372)||(29858485-29858570)
chr3 (281-374)||(49580151-49580244)
chr3 (199-331)||(52198159-52198292)
chr3 (199-291)||(40796129-40796221)
chr3 (127-178)||(40890290-40890340)
chr3 (281-375)||(6738312-6738406)
chr3 (278-372)||(44106704-44106797)
chr3 (201-374)||(48390725-48390899)
chr3 (199-335)||(4553194-4553331)
chr3 (287-372)||(10371183-10371268)
chr3 (256-372)||(43582638-43582755)
chr3 (281-374)||(52572696-52572789)
[»] chr6 (20 HSPs)
chr6 (199-332)||(256442-256576)
chr6 (198-331)||(9458666-9458800)
chr6 (199-372)||(27738776-27738950)
chr6 (199-331)||(18908897-18909030)
chr6 (198-372)||(28079606-28079781)
chr6 (199-363)||(5863302-5863467)
chr6 (199-272)||(29199896-29199969)
chr6 (281-373)||(30986340-30986432)
chr6 (199-330)||(32053092-32053218)
chr6 (199-332)||(32853848-32853982)
chr6 (198-374)||(20349067-20349244)
chr6 (199-373)||(27534688-27534863)
chr6 (129-184)||(34179096-34179152)
chr6 (129-192)||(13769017-13769080)
chr6 (281-372)||(31496521-31496612)
chr6 (281-372)||(31501907-31501998)
chr6 (22-60)||(256714-256752)
chr6 (199-312)||(12678064-12678178)
chr6 (199-331)||(13769076-13769209)
chr6 (204-372)||(32532549-32532718)
[»] scaffold0519 (1 HSPs)
scaffold0519 (276-372)||(10372-10468)
[»] scaffold0008 (2 HSPs)
scaffold0008 (199-312)||(67753-67867)
scaffold0008 (199-312)||(75596-75710)
[»] scaffold0059 (1 HSPs)
scaffold0059 (199-291)||(70099-70192)
[»] scaffold0013 (2 HSPs)
scaffold0013 (199-268)||(105484-105553)
scaffold0013 (199-300)||(128103-128205)
[»] scaffold0795 (1 HSPs)
scaffold0795 (270-375)||(300-404)
[»] scaffold0244 (1 HSPs)
scaffold0244 (203-312)||(4552-4661)
[»] scaffold0036 (1 HSPs)
scaffold0036 (199-272)||(33397-33470)
[»] scaffold0015 (1 HSPs)
scaffold0015 (199-264)||(55917-55981)


Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 21 - 713
Target Start/End: Complemental strand, 5293671 - 5292976
Alignment:
Q  21 atgatggagaatagaaaggtcgagattgtgagatatggaatgnnnnnnn-gagaactatcataagtgcgtgtcaattgaaagtctgagac---------g 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||  ||||||| |||||||||||||         |    
T  5293671 atgatggagaatagagaggtcgagattgtgagatatggaatgaaaaaagagagaactatcataagtgtctgtcaatcgaaagtctgagactctggctgtg 5293572  T
Q  111 agtttgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatggg 210  Q
     | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  5293571 tgattgaaatagttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggt----- 5293477  T
Q  211 tttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtcaaagcggagaaaa 310  Q
     |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  5293476 -ttggagtgggtacatatatccctgttatccgtcctgtaccagtattttgaaatcggagaaacccaaactcatactcaaacacagtcaaagcggagaaaa 5293378  T
Q  311 cccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattgttaagttgcacatcgtgaacgagattcgtaaatt 410  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  5293377 cccgttaaattgggtttagttcaggcgggtatccgcatgtatgtgttttgttgtcatatctaattgttaagttgcacgtcgtgaacgagattcgtaaatt 5293278  T
Q  411 ttcaatcactatcattattttcgtaaattttcaattactattatcattttatctatctaannnnnnnnatcaaagctttaaatccgaacagtccgatcaa 510  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  5293277 ttcaatcactatcattattttcgtaaattttcaattattattatcattttatctatctaattttttt-atcaaagctttaaatccgaacagtccgatcaa 5293179  T
Q  511 aatcagacgatggtagatattgtaacttccctaatgccctaaagcgtgtagtcttactatagtgaattgaggttcgagaataagtcataaggcactcgca 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5293178 aatcagacgatggtagatattgtaacttccctaatgccctaaagcgtgtagtcttactatagtgaattgaggttcgagaataagtcataaggcactcgca 5293079  T
Q  611 ctgacattgagagaagtggagaaaggactgagaaagtactacaccaagttgtggggagtgaaatttgaaggaagactagttccaaattccaaaagaagtt 710  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5293078 ctgacattgagagaagtggagaagggactgagaaagtactacaccaagttgtggggagtgaaatttgaaggaagactagttccaaattccaaaagaagtt 5292979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 202 - 372
Target Start/End: Original strand, 5181047 - 5181218
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaa 300  Q
    ||||||||||||||||||||| | |||||  | |||| ||||||  |||| ||||||||||||||| | ||||  | || |||||  |||| ||||||||    
T  5181047 gggtatgggtttggggtgggtgcctatatacccgttacccgtcccatacccgtattttgaaatcggggaaaacccatacccatacctaaacccagtcaaa 5181146  T
Q  301 gcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
      || |||||||||| ||||||| |||||||| ||| |||| ||||  ||||| ||||||||| ||||||||    
T  5181147 atggggaaaacccgtcaaattgaatttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 5181218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 35069973 - 35069862
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||| ||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||| | ||||| |||||||||| ||||  |||||    
T  35069973 tttgagtatgggttcggggtgggtacatatatccctgttacccgtcttgtacccgtattatgaaatcggggaaaactcaaactcatacccaaatccagtc 35069874  T
Q  298 aaagcggagaaa 309  Q
    |||  |||||||    
T  35069873 aaattggagaaa 35069862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 39616332 - 39616476
Alignment:
Q  234 tgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||||| ||||||| |||| || ||||||||| || |||| |  | |||||||| ||||| |||||||| ||| |||||| ||| ||||||||||||||||    
T  39616332 tgttacccgtcctatacccgtgttttgaaataggggaaaacccatactcatacccaaactcagtcaaaacggggaaaactcgtcaaattgagtttggttc 39616431  T
Q  333 aggcaggtatccgc-atgtatgtgttttgttgtcatgcctaattg 376  Q
     ||| |||| ||||   ||||| ||||||||||||||||||||||    
T  39616432 gggcgggtaaccgcggggtatgagttttgttgtcatgcctaattg 39616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 44615559 - 44615427
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||||||||||||||| |||||  |||||| ||||||  |||| || |||| ||||| | |||| |  |||||||||| ||||| |||||    
T  44615559 tttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtc 44615460  T
Q  298 aaagcggagaaaacccgttaaattgagtttggt 330  Q
    ||| |||  ||||||||| ||||||||||||||    
T  44615459 aaaacgggaaaaacccgtcaaattgagtttggt 44615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 44793010 - 44793142
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||||||||||||||| |||||  |||||| ||||||  |||| || |||| ||||| | |||| |  |||||||||| ||||| |||||    
T  44793010 tttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtc 44793109  T
Q  298 aaagcggagaaaacccgttaaattgagtttggt 330  Q
    ||| |||  ||||||||| ||||||||||||||    
T  44793110 aaaacgggaaaaacccgtcaaattgagtttggt 44793142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 23058471 - 23058573
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||| | |||| |||||  ||||  | ||||||||||||||| ||||| |||| ||||||||||| |||||    
T  23058471 tttgggtatgggttcggggtgggtacctatatccccgttacccgtctcgtactcgcattttgaaatcggagaaaactcaaacccatactcaaacccagtc 23058570  T
Q  298 aaa 300  Q
    |||    
T  23058571 aaa 23058573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 29936421 - 29936601
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-------ctgaaactcatactcaaac 291  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| ||||||||| ||||| ||||       |  | |||||||| |||||    
T  29936421 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgagatcggggaaaacccatacccatactcatacccaaac 29936520  T
Q  292 acagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
      ||||||| ||| |||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||||||||||||    
T  29936521 ttagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatgccta 29936601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 48125828 - 48125763
Alignment:
Q  127 gagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||||||||||||||||||||||| | || |||||||| |||| ||||||| |||||||||||    
T  48125828 gagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgg 48125763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 375
Target Start/End: Complemental strand, 49250857 - 49250680
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| | ||||| ||| |||||  |  ||| ||||||  |||| || |||||| ||||| |||| || | || ||||| ||||| |||||    
T  49250857 tttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtc 49250758  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||| |||||||||||||| ||||||| |||||||| ||| | || || |  |||||  ||||||||||||||||||||    
T  49250757 aaaacggagaaaacccgtcaaattgaatttggttcgggcggataaccacgggtatgaattttgttgtcatgcctaatt 49250680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 10778646 - 10778526
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| ||||||| ||  |||| | | |||| ||||||  |||| || |||||||||||| | ||||| |||||||||| ||||| ||||||||||    
T  10778646 gtatgggttcggggtggatatctataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaacttaaactcatacccaaacccagtcaaagc 10778547  T
Q  303 ggagaaaacccgttaaattga 323  Q
    ||| ||||||||| |||||||    
T  10778546 ggaaaaaacccgtcaaattga 10778526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 12495015 - 12495189
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| | ||||||||| |||||  | ||||  |||||  || | || |||||||||||| | ||||  |||| |||||  |||| |||||    
T  12495015 tttgggtatgggttcgaggtgggtacctatatacccgttacacgtcccatatccgtgttttgaaatcgggaaaaaccaaaacccataccgaaacccagtc 12495114  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||| || ||||| |||| ||||||  |||||||||||  |||| || ||||||||  |||||||||||||||||    
T  12495115 aaagtggggaaaatccgtcaaattggatttggttcaggtgggtaaccacatgtatgaattttgttgtcatgccta 12495189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 13020687 - 13020773
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||||| |||||||  |||||||||||||| | |||||||||||||| | |||||| |||||  |||  |||||||||||||||||||    
T  13020687 caaacccagtcaagacggagaaaacccgtcagattgagtttggttcggacaggtaaccgcagatataggttttgttgtcatgcctaa 13020773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 36187304 - 36187130
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    ||||||||||||||  |||||||||| |||||  | |||| ||||||  |||| || |||||| ||||| |||| |  | || ||||| ||||| |||||    
T  36187304 tttgggtatgggttcagggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtc 36187205  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| ||| |||||||||  |||||||||||||||| ||| |||| |  |  ||||| ||||||||| ||||||||    
T  36187204 aaaacggggaaaacccgccaaattgagtttggttcgggcgggtaacgacgggtatgggttttgttgccatgccta 36187130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36421698 - 36421775
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| ||||| |||||| ||||||||||| || ||||||||||||| |||| | ||||| |||||||||||    
T  36421698 tgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttctatattcgagacgagtttgg 36421775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 374
Target Start/End: Original strand, 16408953 - 16409122
Alignment:
Q  205 tatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcg 303  Q
    |||||||| ||||| ||||| |||||  |||||| ||||||  |||| || ||||||||| || |||| |  | || ||||| ||||| |||||||| ||    
T  16408953 tatgggttcggggtcggtacctatatacctgttacccgtcccatacccgtgttttgaaattggggaaaacccatacccatacccaaacccagtcaaaacg 16409052  T
Q  304 gagaaaacccgttaaattgagtttggttc-aggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    | |||||||||| |||||| ||||| ||| |||  |||| |||  |||||| ||||||||||||||||||||    
T  16409053 gggaaaacccgtcaaattgggtttgattcgagg--ggtaaccgtgtgtatgggttttgttgtcatgcctaat 16409122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 346
Target Start/End: Complemental strand, 41477036 - 41476888
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg-gagaaactgaaactcatactcaaacacagtc 297  Q
    ||||||||||| || ||||||||||||||||||   ||||||||||| ||||  |||||||  |||||  | ||||  ||||||||| |||||| |||||    
T  41477036 tttgggtatggattcggggtgggtacatatatccacgttatccgtcccgtactcgtattttccaatcgaaaaaaacccaaactcatattcaaactcagtc 41476937  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgc 346  Q
    |||||||  ||||||| | ||| |  ||||||||| | | |||||||||    
T  41476936 aaagcgggaaaaacccatcaaaataggtttggttcggacgggtatccgc 41476888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 3627962 - 3627907
Alignment:
Q  317 aaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||||||||||||||| ||| |||| |||| |||||| ||||||||||||||||||    
T  3627962 aaattgagtttggttcgggcgggtaaccgcgtgtatgagttttgttgtcatgccta 3627907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 13798300 - 13798379
Alignment:
Q  256 ttttgaaatcgg-agaaactgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcag 334  Q
    |||||||||||| | ||||  |||||||||| ||||| |||||| | ||| ||||||||||||||||| |||||||||||    
T  13798300 ttttgaaatcgggaaaaacccaaactcatacccaaacccagtcataccggggaaaacccgttaaattgggtttggttcag 13798379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 34085242 - 34085357
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| |||||||||||||||| | | |||| || |||  |||  || |||||||||| ||| ||||  |||||||||  | ||| |||||||    
T  34085242 tgggtatgggttcggggtgggtacatataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaacccaaactcatatcctaacccagtcaa 34085341  T
Q  300 agcggagaaaacccgt 315  Q
    ||||||||||||||||    
T  34085342 agcggagaaaacccgt 34085357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 50426650 - 50426563
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||||| |||||||| ||||||||||| ||||||||| |||||||||  || |||| ||||  |||||  |||||||| ||||||||||    
T  50426650 caaacccagtcaaaacggagaaaacctgttaaattgggtttggttcgagccggtaaccgcgggtatggattttgttgccatgcctaat 50426563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 51421863 - 51422006
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| |||||||||||||||||   ||||| ||||||  |||| || |||||| ||| ||| ||||  | || ||||| ||||| |||||    
T  51421863 tttgggtatgggttcggggtgggtacatatatacatgttacccgtcccatacccgtgttttgagatcgggaaaaacccatacccatacccaaacccagtc 51421962  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggta 341  Q
    |||  || |||||||| | |||||| ||||||||| ||| ||||    
T  51421963 aaaatggggaaaacccatcaaattgggtttggttcgggcgggta 51422006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 13692645 - 13692772
Alignment:
Q  208 gggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtcaaagcggag 306  Q
    ||||||||||||||||| |||  ||||||| ||||||| |||||  | || ||||||||| | ||||| |||||||||||||||| || |  ||||||      
T  13692645 gggtttggggtgggtacctat--ctctgttttccgtcccgtacccatgttatgaaatcgggaaaaactcaaactcatactcaaacccaatttaagcgggt 13692742  T
Q  307 aaaacccgttaaattgagtttggttcaggc 336  Q
    ||||||| | ||||||| |||| |||||||    
T  13692743 aaaacccatcaaattgaatttgattcaggc 13692772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 369
Target Start/End: Complemental strand, 19572591 - 19572425
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| ||||||||||| |||||  | |||| | ||||  |||| || |||||||||| ||| ||||  | || ||||| ||||| ||||||||      
T  19572591 gtatgggttcggggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacccagtcaaaat 19572492  T
Q  303 ggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgc 369  Q
    || |||||||||| |||||  ||||||||| ||| |||| || || ||||| ||||||||| |||||    
T  19572491 ggggaaaacccgtcaaattaggtttggttcgggcgggtaaccacaagtatgggttttgttgccatgc 19572425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 2581505 - 2581561
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttc 172  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| ||||    
T  2581505 tgaaatgatttagagtttgagtttctatttatataaaag-gatattaaattgattttc 2581561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 10450143 - 10450078
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaat 264  Q
    |||||||||| ||| |||||||||||||||||| |||||| ||| || ||||| ||||||| ||||    
T  10450143 tttgggtatgagttcggggtgggtacatatatccctgttacccgccccgtacccgtattttaaaat 10450078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 19003741 - 19003628
Alignment:
Q  208 gggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaagcggag 306  Q
    ||||||||||||| |||||||||| | |||||||||||  |||| |||||||| |||||| | ||||   ||| ||||| |||||  ||||||| ||| |    
T  19003741 gggtttggggtggatacatatatccccgttatccgtcccatacccgtattttgtaatcggggaaaacccgaacccatacccaaacctagtcaaatcgggg 19003642  T
Q  307 aaaacccgttaaat 320  Q
    ||||||||| ||||    
T  19003641 aaaacccgtcaaat 19003628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 23719535 - 23719610
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    ||||||| |||  |||||||||||||||||||||||||  | || |||||||| |||  ||||||||||||||||||    
T  23719535 tgaaatgatttatagtttgagtttctatttatataaaaagggtagtaaattga-tttgtacattcgggacgagtttg 23719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 29871369 - 29871237
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||| |||  |||||||||| |||||  | |||| | ||||  ||||  | ||||||||||||||||| |  |||||||||| |||||  ||||    
T  29871369 tttgggtatgagttcagggtgggtacctatataccagttacctgtcccatacccatgttttgaaatcggagaaaacccaaactcatacccaaacttagtc 29871270  T
Q  298 aaagcggagaaaacccgttaaattgagtttggt 330  Q
    ||| ||  |||||||||| ||||||||||||||    
T  29871269 aaaacgaggaaaacccgtcaaattgagtttggt 29871237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 39219191 - 39219267
Alignment:
Q  116 gaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    |||||| ||| | ||||||||||||||||||||||||| | ||||||||| | |||| |||||  | ||||||||||    
T  39219191 gaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgg 39219267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 33293663 - 33293600
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||||||||||| ||||||||  | || |||||||| |||| |||||||| ||||||||||    
T  33293663 gtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgg 33293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 14890991 - 14891029
Alignment:
Q  22 tgatggagaatagaaaggtcgagattgtgagatatggaa 60  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  14890991 tgatggagaagagagaggtcgagattgtgagatatggaa 14891029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 8880380 - 8880457
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| |||  |||||||||||||||||||| ||||| | ||||||||| | ||| | |||| |||||| ||||||    
T  8880380 tgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatttatttttagcatttgggacgggtttgg 8880457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 12718856 - 12718783
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    ||||||||||||||  |||||||||||||||| || |||| |||||  ||||  ||||| ||||||||| ||||    
T  12718856 tttgggtatgggttcagggtgggtacatatatttccgttacccgtctcgtacacgtattatgaaatcggggaaa 12718783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 16237388 - 16237315
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| |||||  |||||||||||   |||| ||||||  |||| ||||||||||||||| ||||    
T  16237388 tttgggtatgggttcggggttagtacatatatcctcgttacccgtcccttacccgtattttgaaatcggggaaa 16237315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 47644999 - 47644966
Alignment:
Q  132 tgagtttctatttatataaaagtgataataaatt 165  Q
    |||||||||||||||||||||| |||||||||||    
T  47644999 tgagtttctatttatataaaagggataataaatt 47644966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 27777282 - 27777108
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| | ||||||||||| | |||| |||||||| |||||||||| ||| ||||| |||| ||||| ||||| |||||    
T  27777282 tttgggtatgggttcggggtgggtacctgtatctctgttacctgtcccgtacctgtgttttgaaatcgggaaaaactcaaacacatacccaaacccagtc 27777183  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| |||||||||||||| ||||| |||||||||| |  ||||| | ||  ||||| ||||||||||||||||||    
T  27777182 aaaacggagaaaacccgtcaaattaagtttggttcggataggtacctgcgggtatgagttttgttgtcatgccta 27777108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 115 - 302
Target Start/End: Original strand, 29918538 - 29918715
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttg 214  Q
    ||||||| ||| | ||||||||||||||||||||||||| | ||||||||||| |||  ||||| |||||| |||||            |||||| || |    
T  29918538 tgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgt-----------gtatggtttcg 29918626  T
Q  215 gggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtcaaagc 302  Q
    |||||||||||||||||| ||||| |||| |||||| ||| |||||||||| ||| ||||| |||||||||| ||||  ||||||||||    
T  29918627 gggtgggtacatatatctttgttacccgttctgtacatgtgttttgaaatcgggaaaaactcaaactcatacccaaaaccagtcaaagc 29918715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 377
Target Start/End: Complemental strand, 43113711 - 43113531
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagt 296  Q
    ||||||||||| ||| ||||||||||| |||||  |||||| ||||||  | || || |||||||||||| | ||||  || ||||||| ||||| ||||    
T  43113711 atttgggtatgagttcggggtgggtacctatatacctgttacccgtcccatgcccgtgttttgaaatcgggaaaaacccaatctcatacgcaaacccagt 43113612  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattgt 377  Q
    |||||| | ||||||||||||||||| ||||||||| ||  |||| || |  ||||| ||||| ||| |||||||| ||||    
T  43113611 caaagcagggaaaacccgttaaattgggtttggttcgggtgggtaaccacgggtatgagttttattgccatgcctatttgt 43113531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 204 - 377
Target Start/End: Original strand, 27932422 - 27932597
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| ||||||||||| |||||  | ||||  |||||  |||| || |||||||||||| |||| |  | || ||||| ||||| |||||||| |    
T  27932422 gtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaac 27932521  T
Q  303 ggagaaaacccgttaaattgagtttggttcaggcaggtatcc-gcatgtatgtgttttgttgtcatgcctaattgt 377  Q
    || |||||||||| |||||| ||||||||| ||| |||| || ||  ||||| |||||||||||||||||||||||    
T  27932522 ggggaaaacccgtcaaattgggtttggttcgggcgggtaacccgcgggtatgagttttgttgtcatgcctaattgt 27932597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 15173964 - 15173831
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||| ||||| ||| | ||||| ||||||||||||  ||| |||||| ||||| ||||||||||||| ||| ||||| |||| ||||| ||||| |||||    
T  15173964 tttgagtatgagttcgaggtggatacatatatctcatttacccgtcccgtacccgtattttgaaatcgggaaaaactcaaacacatacccaaacccagtc 15173865  T
Q  298 aaagcggagaaaacccgttaaattgagtttggtt 331  Q
    ||| | |||||||||||| |||| ||| ||||||    
T  15173864 aaatcagagaaaacccgtcaaatcgaggttggtt 15173831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 11255021 - 11254925
Alignment:
Q  276 aaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||| ||||| |||||  ||||||| |||| ||||||||| ||||||  |||||||| | |||||| ||||||||||| ||||||||||||||||||    
T  11255021 aaacccatacccaaacctagtcaaaacggaaaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtcatgccta 11254925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 201 - 372
Target Start/End: Complemental strand, 40248453 - 40248281
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| ||| ||||||| |||||  | ||||||||||   |||| || |||||||||||| |||| |  | || ||||| ||||| |||||||    
T  40248453 tgggtatgggttcgggatgggtacctatatacccgttatccgtctcatacccgtgttttgaaatcggggaaaacatatacccatacccaaacccagtcaa 40248354  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    | |||  ||||||||| |||||| |||||||||||||  ||| ||||  ||||| ||||||||||||| ||||    
T  40248353 aacgggaaaaacccgtcaaattgggtttggttcaggcgagtaaccgcgggtatgggttttgttgtcataccta 40248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 40789593 - 40789695
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    ||||||||| |||| |||||||||||||||||| |||||| |||||| |||||| |||| |||||| || | ||||  ||||||||| |||||| |||||    
T  40789593 tttgggtataggttcggggtgggtacatatatccctgttacccgtccagtacctatattatgaaattggggaaaacccaaactcatattcaaactcagtc 40789692  T
Q  298 aaa 300  Q
    |||    
T  40789693 aaa 40789695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 368
Target Start/End: Original strand, 14687403 - 14687573
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||| |||||||||| |||||   |||||  ||||||| |||||||||||| | ||||  |||  ||||| ||||| || ||    
T  14687403 tttgggtatgggttcggggtggatacatatatccctgtttctcgtcccatacctgtgttttgaaatcggggaaaacccaaatccatacccaaacccaatc 14687502  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    |||| || |||||||||  |||||| ||| ||||  || ||| | ||||  ||||| ||||||||||||||    
T  14687503 aaagtggggaaaacccgccaaattgggttaggttttggtaggcacccgcgggtatgggttttgttgtcatg 14687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 20399596 - 20399730
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||| ||||||| ||||||||||  |||||  | |||| ||||||  |||| || |||||||||||||| ||||  |||| ||||| ||||| |||||    
T  20399596 tttgggaatgggttcggggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccaaacccatacccaaacccagtc 20399695  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||| ||| |||||| ||| |||||| |||||||||    
T  20399696 aaaacggggaaaactcgtcaaattgggtttggttc 20399730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 2075835 - 2075743
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||||| ||||| |||||||| ||||||||| |||| |||||| ||||||||||||| |||| || |   |||| ||||||||| |||||||||    
T  2075835 catacccaaacccagtcaaaacggagaaaatccgtcaaattgggtttggttcaggcgggtaaccacggatatgagttttgttgccatgcctaa 2075743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 5793516 - 5793592
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    ||||||| ||| | |||||||||||||||||||||||| ||||||| |||||| |||  |||||  |||||||||||    
T  5793516 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttg 5793592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 14155536 - 14155672
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtc 297  Q
    ||||||||||  |||||||||| || |||||||   |||| || || | |||| || |||||||||||| | ||||  |||||||||| ||||| |||||    
T  14155536 tttgggtatgaatttggggtggataaatatatcctcgttacccatcttatacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccagtc 14155635  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcag 334  Q
    | | ||| |||||||||| |||||| |||||||||||    
T  14155636 ataccggggaaaacccgtcaaattgggtttggttcag 14155672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 45236075 - 45236243
Alignment:
Q  205 tatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcg 303  Q
    |||||||| ||||||||||| |||||  |  ||| ||||||  |||| || |||||||||| | |||| || | || ||||||||||| |||||||| ||    
T  45236075 tatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaactcatacccatactcaaactcagtcaaaacg 45236174  T
Q  304 gagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    | |||||||||| ||||||  ||||| |||| |||||| | ||  || || ||||||||| ||||||||    
T  45236175 gggaaaacccgtcaaattggttttggctcagacaggtaactgcgggtttgggttttgttgccatgccta 45236243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 6388581 - 6388470
Alignment:
Q  218 tgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaa-actgaaactcatactcaaacacagtcaaagcggagaaaacccgtt 316  Q
    ||||||| |||||| | |||| ||||| |||||| || |||| ||||||| ||| ||  |||| ||||| ||||| |||||||| |||||||| |||||     
T  6388581 tgggtacctatatccccgttacccgtcttgtacccgtgttttaaaatcggggaagacccaaacccatacccaaactcagtcaaaacggagaaagcccgtc 6388482  T
Q  317 aaattgagtttg 328  Q
    ||||||||||||    
T  6388481 aaattgagtttg 6388470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 17469259 - 17469332
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||||||||||||||| |||||  | |||| ||||||  |||| || |||||||||||| ||||    
T  17469259 tttgggtatgggtttggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaa 17469332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 30904049 - 30904134
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcat 283  Q
    |||||||||||||| |||||||||||| ||||||||  ||| |||||  ||||| || |||||||||||  |||||  ||||||||    
T  30904049 atttgggtatgggtatggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatcgaggaaacccaaactcat 30904134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 17084107 - 17084027
Alignment:
Q  288 aaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    |||| |||||||||||| |||||||||| || |||| |||||||| ||  |||| || || ||||| ||||||||||||||    
T  17084107 aaacccagtcaaagcggggaaaacccgtcaacttgaatttggttcgggtgggtacccacaagtatgggttttgttgtcatg 17084027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 320
Target Start/End: Complemental strand, 15068668 - 15068550
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaa 300  Q
    ||||||||||| ||||||| |||||||||| | |||| | |||| ||||| ||||||||||||||| | ||||   ||| ||||| || || ||||||||    
T  15068668 gggtatgggttcggggtggatacatatatc-ccgttacctgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccagacccagtcaaa 15068570  T
Q  301 gcggagaaaacccgttaaat 320  Q
     ||| |||||||||| ||||    
T  15068569 tcggggaaaacccgtcaaat 15068550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 17108321 - 17108384
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    |||| |||||||||||||||||||  ||||||||||||| |||  ||| |||||| ||||||||    
T  17108321 gtttaagtttctatttatataaaatggataataaattgattttttacaatcgggatgagtttgg 17108384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 2183690 - 2183588
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtc 297  Q
    |||| ||||| ||| ||||||||||||||||||||  ||| |  ||  ||||| |||||||||||||||||||| |  ||||||||||  |||| |||||    
T  2183690 tttgagtatgagttcggggtgggtacatatatctccattacctctctcgtacccgtattttgaaatcggagaaaatccaaactcatacctaaacccagtc 2183591  T
Q  298 aaa 300  Q
    |||    
T  2183590 aaa 2183588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 320
Target Start/End: Complemental strand, 27056634 - 27056517
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| |||||||||| ||||| | | |||| ||||||  |||||||| ||||||||| ||| ||||  |||| ||||  ||||| ||| ||||||    
T  27056634 gtatgggttcggggtgggtagatataaccccgttacccgtcccatacctgtactttgaaatcgggaaaaacccaaacccataaccaaacccagccaaagc 27056535  T
Q  303 ggagaaaacccgttaaat 320  Q
    |  |||||||||| ||||    
T  27056534 gaggaaaacccgtcaaat 27056517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 36274993 - 36275042
Alignment:
Q  135 gtttctatttatataaaagtgataataaattgactttcaacattcgggac 184  Q
    ||||||||||||||||||| |||| |||||||| |||  |||||||||||    
T  36274993 gtttctatttatataaaagggatagtaaattgattttttacattcgggac 36275042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 201 - 368
Target Start/End: Complemental strand, 29246034 - 29245866
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||||||||||||||| |||||   |||||| |||||  |||| || ||||||||||||||||| || | || ||||| |||||  ||||||    
T  29246034 tgggtatgggtttggggtgggtacctatatacatgttattcgtcccatacccgtgttttgaaatcggagaaaactcatacccatacccaaacctagtcaa 29245935  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    | ||| |||||||||| |||||||||||||||| ||| |||| ||||  ||||| ||||||||||||||    
T  29245934 aacggggaaaacccgtcaaattgagtttggttcgggcgggtaaccgcgggtatgggttttgttgtcatg 29245866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 135 - 372
Target Start/End: Complemental strand, 16311431 - 16311204
Alignment:
Q  135 gtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttggggtgggtacatatatctct 234  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||  |||||     |||      ||||||| ||||||||||| |||||| ||    
T  16311431 gtttctatttatataaaagggataataaattgattttcaacattcgagacaggtttg-----aat------atgggttcggggtgggtacctatatccct 16311343  T
Q  235 gttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttca 333  Q
    ||||||||||  ||||  || |||||||||||| | ||||| |||||||||  ||||| || |||||||||  |||| |||| |||||  ||||||||||    
T  16311342 gttatccgtctcgtactcgtgttttgaaatcggaaaaaactcaaactcatatccaaacccaatcaaagcgggaaaaaaccgtcaaattaggtttggttca 16311243  T
Q  334 ggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| |||| ||||   |||| |||||||||| |||||||    
T  16311242 ggcgggtacccgcggatatgagttttgttgttatgccta 16311204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 12712642 - 12712569
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  12712642 tttgggtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12712569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 12773906 - 12773833
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||| ||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  12773906 tttgagtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12773833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 115 - 333
Target Start/End: Original strand, 29664902 - 29665107
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttg 214  Q
    ||||||| ||| ||||||||||||||||||| ||||||| | || |||||||| |||  |||||||||||| ||||||           ||||| ||| |    
T  29664902 tgaaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgg-----------gtatgagttcg 29664990  T
Q  215 gggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtcaaagcggagaaaacccg 314  Q
      |||||||| |||||| | |||| || || |||||| || |||||||||||||| |||  |||||||||| ||||| || |||||||||| ||||||||    
T  29664991 aagtgggtacctatatccccgttacccatcatgtacccgtgttttgaaatcggag-aacccaaactcatacacaaactcaatcaaagcgga-aaaacccg 29665088  T
Q  315 ttaaattgagtttggttca 333  Q
    | ||||||| |||||||||    
T  29665089 tcaaattgaatttggttca 29665107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 28569106 - 28568984
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||| | |||| |||||| ||||| | ||||||||||||| |||| |  |||||||||| ||||| |||||    
T  28569106 tttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccgcattttgaaatcggggaaaatccaaactcatacccaaacccagtc 28569007  T
Q  298 aaagcggagaaaacccgttaaat 320  Q
    ||| | | |||||||||| ||||    
T  28569006 aaatcagggaaaacccgtcaaat 28568984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 2681220 - 2681353
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||| |||  ||||| |  ||| || ||| ||||||||||||||||||||| | ||||  |||||||| | ||||| |||||    
T  2681220 tttgggtatgggttcggggtggatactcatatccccattacccatcccgtacctgtattttgaaatcggggaaaacccaaactcatgcccaaactcagtc 2681319  T
Q  298 aaagcggagaaaacccgttaaattgagtttggtt 331  Q
    ||| ||| |||||||||| |||||||| ||||||    
T  2681320 aaatcggggaaaacccgtcaaattgaggttggtt 2681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 374
Target Start/End: Complemental strand, 6156003 - 6155829
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| |||||||||||||||||  ||  || | ||||| |||| || |||||||||||| |||| |  |||| ||||| ||||| |||||    
T  6156003 tttgggtatgggttcggggtgggtacatatatacct--tacctgtcctatacccgtgttttgaaatcggggaaaacccaaacacatacccaaacccagtc 6155906  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||| || |||||||||||||||||   |||||| | ||  | || ||||| ||||| ||||||||| ||||||||||    
T  6155905 aaaacgaagaaaacccgttaaatttgatttggtacgggtggataaccgcaggtatgagttttgttgccatgcctaat 6155829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 12250974 - 12251041
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg 266  Q
    ||||||||||||||  | |||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  12250974 tttgggtatgggttcagagtgggtacatatatctctgttacccgtccggtacccgtattttgaaatcg 12251041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 12866634 - 12866471
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| | ||||||||| |||||  |||||| ||||||  ||||  | |||||||||||||| ||||| | || ||||| ||||| |||||||    
T  12866634 tgggtatgggttcgcggtgggtacctatatacctgttacccgtcccatacccatgttttgaaatcggagaaaactcatacccatacccaaacccagtcaa 12866535  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttg 363  Q
    |  || |||||||||| ||||||  |||||||| | | |||| || |||||||| |||||||||    
T  12866534 aatggggaaaacccgtcaaattggatttggttcggacgggtaaccacatgtatgggttttgttg 12866471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 4920830 - 4921004
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||| ||| |||||  | |||| ||||||  |||| || |||||| ||||| |||| |  | || ||||  ||||| |||||    
T  4920830 tttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtc 4920929  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| |||||||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| ||||||||    
T  4920930 aaaacggagaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 4921004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 23045072 - 23044974
Alignment:
Q  203 ggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaa 300  Q
    |||||||||| |||||||||||||||||||| |||| || ||| ||||| ||||||||||||||| | ||||  |||| ||||| ||||| ||||||||    
T  23045072 ggtatgggttcggggtgggtacatatatctccgttacccatcccgtacccgtattttgaaatcggggaaaacctaaacccatacccaaactcagtcaaa 23044974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 10822608 - 10822538
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    ||||||||||| |||||||||||||||| | | |||| ||||||| |||| || |||||||||||||||||    
T  10822608 gggtatgggttcggggtgggtacatataaccccgttacccgtcctatacccgtgttttgaaatcggagaaa 10822538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 362
Target Start/End: Complemental strand, 12834657 - 12834495
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| ||||| ||||| |||||  |||||| ||||||  || |  | ||||||||| ||||||| |  | || ||||| ||||| |||||||    
T  12834657 tgggtatgggttcggggtaggtacctatatacctgttacccgtcccatatccatgttttgaaattggagaaaacccatacccatacccaaacccagtcaa 12834558  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgtt 362  Q
    |  || |||||||||| |||||||||||||||| | | |||| || |||||||| ||||||||    
T  12834557 aatggggaaaacccgtcaaattgagtttggttcggacgggtaaccacatgtatgggttttgtt 12834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 373
Target Start/End: Original strand, 15890213 - 15890385
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| ||| ||||||| |||||  | |||| ||||||  |||| || ||||||||||||||||| |  | || ||||  |||||  ||||||    
T  15890213 tgggtatgggttcggg-tgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccatacacatagccaaacctagtcaa 15890311  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    | |||  ||||||||| ||||||  |||||||| ||| |||| ||||  ||||| |||||||||||||||||||    
T  15890312 aacgggaaaaacccgtcaaattggatttggttcgggcgggtaaccgcgagtatgggttttgttgtcatgcctaa 15890385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 18452022 - 18451967
Alignment:
Q  136 tttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    |||||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||||    
T  18452022 tttctattaatataaaagggataataaattgattttctacaatcgggacgagtttg 18451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 40517893 - 40517988
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattg 376  Q
    ||||| ||||| |||||||| |||  |||| |||| ||||||| |||||||||||| |||| || |  ||||| ||||||||| ||||||||||||    
T  40517893 catacccaaacccagtcaaaacgggaaaaatccgtcaaattgaatttggttcaggcgggtaaccacgggtatgggttttgttgccatgcctaattg 40517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 5908773 - 5908639
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    ||||||||||||||||||||| ||||||||||  | |||| ||||||  |||| || ||| || ||||| | ||||| | || ||||| ||||| || ||    
T  5908773 tttgggtatgggtttggggtgtgtacatatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactcatacccatacccaaacccaatc 5908674  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttc 332  Q
    |||  || |||||||||| |||||| |||||||||    
T  5908673 aaaatggggaaaacccgtcaaattgggtttggttc 5908639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 38006555 - 38006489
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaat 264  Q
    ||||||||||||||| ||||||||||| ||||| |||||||  |||||  |||| ||||||||||||    
T  38006555 atttgggtatgggttcggggtgggtacctatatatctgttacgcgtcccatacccgtattttgaaat 38006489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 12457468 - 12457525
Alignment:
Q  135 gtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    |||||||||||||| |||| | ||||||||||| |||| |||||||||||| ||||||    
T  12457468 gtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgg 12457525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 16366591 - 16366528
Alignment:
Q  130 tttgagtttctatttatataaaagtga-taataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||||||| |||||||||||| || ||||||| | | |||| |||||||||||||||||||    
T  16366591 tttgagtttctttttatataaaagggagtaataaaataattttctacattcgggacgagtttgg 16366528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 17853295 - 17853204
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| || ||||| ||| |||||||||| |||||  ||||||||||||  |||| ||||  ||||| ||||||||| ||||||||    
T  17853295 catacccaaacccaatcaaaacggggaaaacccgtcaaattaggtttggttcaggtgggtaaccgcgggtatgcgttttgttgccatgccta 17853204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 35311900 - 35311991
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| |||||||| |||| |||| |||| |||||| ||||||||| ||| |||| ||||   |||| ||||| ||||||||||||    
T  35311900 catacccaaactcagtcaaaacggaaaaaatccgtcaaattgggtttggttcgggcgggtaaccgcggatatgagttttattgtcatgccta 35311991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 40187790 - 40187723
Alignment:
Q  139 ctatttatataaaagtgataataaattgactttcaacattcgggacgagttt-ggtatgaatttgggt 205  Q
    ||||||||||||||| | ||||||||| | |||| | ||||||||||||||| ||||||| |||||||    
T  40187790 ctatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatgagtttgggt 40187723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 6092531 - 6092445
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcat 367  Q
    ||||| ||||| || ||||| ||| |||||||||||||||||| |||||||| ||| |||| ||    ||||| |||||||||||||    
T  6092531 catacccaaacccaatcaaaacggggaaaacccgttaaattgaatttggttcgggcgggtaacctagggtatgagttttgttgtcat 6092445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 16311535 - 16311497
Alignment:
Q  22 tgatggagaatagaaaggtcgagattgtgagatatggaa 60  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  16311535 tgatggagaagagagaggtcgagattgtgagatatggaa 16311497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 39887260 - 39887202
Alignment:
Q  114 ttgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttc 172  Q
    |||||||| ||| || || ||||||||||||||||||||| || |||||||||| ||||    
T  39887260 ttgaaatgatttagatttcgagtttctatttatataaaagagagaataaattgattttc 39887202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 360
Target Start/End: Complemental strand, 40187741 - 40187580
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||||||| ||  ||| |||||||| |||| |||||  | ||| || ||||||||| || |||| |  ||||||||   ||||| |||||    
T  40187741 tttgggtatgagtttggg-tgaatacctatatctccgttacccgtctcgcacccgtgttttgaaattggggaaaacccaaactcatttccaaacccagtc 40187643  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttg 360  Q
    ||||||  |||||||||| ||| |||||||||||| | | |||| ||||| ||||| ||||||    
T  40187642 aaagcgaggaaaacccgtcaaaatgagtttggttcggacgggtacccgcaggtatgagttttg 40187580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 17153173 - 17153242
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgga 268  Q
    |||||||||||||||||| || |||||||||||   ||||||||||| |||||  | |||| ||||||||    
T  17153173 tttgggtatgggtttgggatgagtacatatatcatagttatccgtcccgtacccatgttttaaaatcgga 17153242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 22694986 - 22694817
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtca 298  Q
    |||||||||||||| ||||||||||| | |||  | ||||  |||||  |||| ||||||||| ||||| |||||  | || ||||| ||||| |||| |    
T  22694986 tttgggtatgggttcggggtgggtacctctatacccgttagtcgtcccatacccgtattttgagatcggggaaacccatacccatacccaaacccagtta 22694887  T
Q  299 aagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    || |||  |||  |||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| ||||    
T  22694886 aaacgggaaaattccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatg 22694817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 32575023 - 32574950
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    ||||||| |||||| ||| ||||||||||||||  ||||| || ||| ||| |||| |||||||||||| ||||    
T  32575023 tttgggtttgggttcgggatgggtacatatatccatgttacccatcccgtatctgtgttttgaaatcggggaaa 32574950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 235 - 372
Target Start/End: Original strand, 37218050 - 37218188
Alignment:
Q  235 gttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttca 333  Q
    |||| |||||| |||||||| ||||||||| ||| ||| || |||||||||| ||||| |||||||| ||| |||||||| | ||||||||||||||||     
T  37218050 gttacccgtcccgtacctgtgttttgaaataggataaaactcaaactcatacccaaacccagtcaaaacggggaaaacccatcaaattgagtttggttcg 37218149  T
Q  334 ggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||  |||||||||  ||||| ||||||||||||||||||    
T  37218150 ggtgggtatccgctggtatgagttttgttgtcatgccta 37218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 198 - 374
Target Start/End: Complemental strand, 45885850 - 45885673
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagt 296  Q
    |||| |||||||||| ||||||||||| |||||   ||||| ||||||  |||| || |||||| ||||| |||| || | || ||||| ||||| ||||    
T  45885850 attttggtatgggttcggggtgggtacctatatacttgttacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagt 45885751  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    |||| ||||||||||||||||||||| |||||||||  || |||| || |  ||||| ||||||||| ||||||||||    
T  45885750 caaaacggagaaaacccgttaaattgggtttggttcgagcgggtaaccacgggtatgggttttgttgccatgcctaat 45885673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 27063147 - 27063249
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg-gagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||||| |  ||||| |||||||||| ||||| |||||    
T  27063147 tttgggtatgagttcggggtgagtacatatatccccgttatccgtcctgtacccgtattttgaaatcgaggaaaactcaaactcatacccaaacccagtc 27063246  T
Q  298 aaa 300  Q
    |||    
T  27063247 aaa 27063249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 201 - 371
Target Start/End: Original strand, 10072477 - 10072648
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| ||||||||||| |||||  | |||| |||| |  |||| || |||||||||||| | ||||  | || ||||| ||||| |||||||    
T  10072477 tgggtatgggttcggggtgggtacctatatacccgttacccgttccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaa 10072576  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcct 371  Q
    | ||| |||||||||| |||||| ||||||||| ||| |||| ||||  ||||| ||||||||| |||||||    
T  10072577 aacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcct 10072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 12980386 - 12980561
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  |  ||| ||||||  |||| || |||||||||||| |||| |  |||| ||||| ||||| |||||    
T  12980386 tttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaaccaaaacccatacccaaacccagtc 12980485  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    |||  || |||||||||||||||||||||||||||  || |||| || |  ||||| ||||||||| |||| ||||    
T  12980486 aaaatggggaaaacccgttaaattgagtttggttctagcgggtaaccacgggtatgagttttgttgccatgtctaa 12980561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 373
Target Start/End: Complemental strand, 3227025 - 3226855
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| ||||||||||| |||||  |||||| ||||||  |||| || |||||||||||| |||| |  | || ||||||||||| |||| ||| |    
T  3227025 gtatgggttcggggtgggtacctatattcctgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatactcaaactcagttaaaac 3226926  T
Q  303 ggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    |  ||||| |||| |||||| ||||||||| | | |||| |||||||||||  |||||||| |||||||||    
T  3226925 gaggaaaatccgtcaaattgggtttggttcggacgggtaaccgcatgtatggattttgttgccatgcctaa 3226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 372
Target Start/End: Original strand, 30650639 - 30650814
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagt 296  Q
    ||||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || |||||| || || | ||||| | || |||||  |||| ||||    
T  30650639 atttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagattggggaaaactcatacccatacctaaacccagt 30650738  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||| ||| |||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| ||||||||    
T  30650739 caaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttgacatgccta 30650814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 3157092 - 3157265
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    ||||||||| |||| || |||||||| |||||| | |||||||||||  ||||  |||||||||||||| | ||||  |||| ||||| |||||  ||||    
T  3157092 tttgggtataggttcggtgtgggtacctatatccccgttatccgtcccatacccatattttgaaatcggggaaaacctaaacccatacccaaaccaagtc 3157191  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||||| ||||| |||  |||||  ||||||||| ||| |||| |||||||||||  ||||| || ||||||||    
T  3157192 aaagcggggaaaa-ccgacaaattaggtttggttcgggcgggtacccgcatgtatgatttttggtgccatgccta 3157265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 18683983 - 18684056
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| | ||||| |||||||||| |||||| |||||| ||||| ||||||||||||||| ||||    
T  18683983 tttgggtatgggttcgaggtggatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaa 18684056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 32546201 - 32546269
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg 267  Q
    |||||||||||||| |||||||||||||||||| | |||| |||| | ||||| |||||||||||||||    
T  32546201 tttgggtatgggttcggggtgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgg 32546269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 375
Target Start/End: Original strand, 5377093 - 5377271
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagt 296  Q
    ||||||||||||||| ||||||||||| |||||  |  ||| ||||||  ||||||| |||||||||||| | ||||  |||||||||||||| | || |    
T  5377093 atttgggtatgggttcggggtgggtacctatataccctttacccgtcccatacctgtgttttgaaatcggggaaaacccaaactcatactcaaccccaat 5377192  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    |||| |||  |||| ||||||||||   ||||||||||  ||||| || |  |||||  |||| ||||||||| |||||    
T  5377193 caaaacgggaaaaatccgttaaattagatttggttcagataggtaaccacgggtatgaattttattgtcatgcgtaatt 5377271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 25980002 - 25979928
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    ||||||||||| ||||||||||||||||||||| || |||| |||||   ||||||| |||||||||||| ||||    
T  25980002 atttgggtatgagtttggggtgggtacatatatatccgttacccgtctcatacctgtgttttgaaatcggggaaa 25979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 3920547 - 3920620
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||  |||| || |||||||||||| ||||    
T  3920547 tttgggtatgggttcggggtgggtacctatatacctgttatccgtcccataccagtgttttgaaatcggggaaa 3920620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 33841092 - 33841208
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| |||||| ||||||||| |  ||||| ||||||  |||| || |||||||||||| | ||||| ||| |||||||||||| ||||||||||    
T  33841092 gtatgggttcggggtgagtacatataaccatgttacccgtcccatacccgtgttttgaaatcggggaaaactcaaattcatactcaaac-cagtcaaagc 33841190  T
Q  303 ggagaaaacccgttaaat 320  Q
    ||  ||||||||| ||||    
T  33841191 gggaaaaacccgtcaaat 33841208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 36251087 - 36251010
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||||||| |||||| ||||| |||||||||||||    ||||||||||| |||| |||||||||||| ||||||    
T  36251087 tgaaatggtttagagttttagtttttatttatataaaatatgtaataaattgattttctacattcgggacgggtttgg 36251010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 320
Target Start/End: Complemental strand, 8906667 - 8906551
Alignment:
Q  205 tatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcg 303  Q
    |||||||| |||||||||||||||| | | ||||| ||||   |||  || ||||||||||||||||| || |||| ||||| ||||  || ||||||||    
T  8906667 tatgggttcggggtgggtacatataaccccgttattcgtctcatactcgtgttttgaaatcggagaaaactcaaacccatacccaaatccaatcaaagcg 8906568  T
Q  304 gagaaaacccgttaaat 320  Q
    |||||||||||| ||||    
T  8906567 gagaaaacccgtcaaat 8906551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 278 - 373
Target Start/End: Original strand, 37182363 - 37182458
Alignment:
Q  278 actcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    |||||||| ||||| |||||||| ||| |||||||||| |||||||||||| ||| ||| |||| ||||   |||| ||||||||| || ||||||    
T  37182363 actcatacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttgattcgggcgggtaaccgcggatatgggttttgttgccacgcctaa 37182458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 278 - 377
Target Start/End: Original strand, 39317084 - 39317183
Alignment:
Q  278 actcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattgt 377  Q
    |||||||  ||||| |||||||| ||| |||||||||| |||||||||||||||| ||| | || ||||  |||||  |||||||| |||||||| ||||    
T  39317084 actcatatccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggttcgggcggataaccgcgagtatgaattttgttgccatgcctacttgt 39317183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 265
Target Start/End: Original strand, 4101492 - 4101617
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttggggtgggtacatat 228  Q
    |||||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |           || |||||||||||  || |||||||||||    
T  4101492 gtttgagtttttatttaaataaaattggtaataaattgattttcaacattcaggacggg-----------ttagggtatgggttcaggatgggtacatat 4101580  T
Q  229 atctctgttatccgtcctgtacctgtattttgaaatc 265  Q
    ||| |||| | || |||||||||||| ||||||||||    
T  4101581 atccctgtaacccatcctgtacctgtgttttgaaatc 4101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 7780017 - 7780151
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    ||||||||| |||| ||||||||||| |||||  |  ||||||||||  |||| || |||||| ||||| |||| |  | || ||||| ||||| |||||    
T  7780017 tttgggtataggttcggggtgggtacctatatacccattatccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtc 7780116  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||| ||| ||||| |||| ||||||||||||||||    
T  7780117 aaaacggggaaaatccgtcaaattgagtttggttc 7780151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 23475270 - 23475225
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||    
T  23475270 caaacccagtcaaagcggggaaaacccgtcaaattgagtttggttc 23475225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 31345474 - 31345531
Alignment:
Q  127 gagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggac 184  Q
    |||||||||||||||||||||||||| || || |||||||| |||  |||||||||||    
T  31345474 gagtttgagtttctatttatataaaaatggtagtaaattgattttttacattcgggac 31345531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 19440020 - 19439972
Alignment:
Q  284 actcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttc 332  Q
    |||||||| |||||||||||| |||||||||| |||||| |||||||||    
T  19440020 actcaaacccagtcaaagcggggaaaacccgtcaaattgggtttggttc 19439972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 24753261 - 24753349
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||||| |||||||| ||||||||| |||| ||||||| |||||||| | | |||| || |  ||||| ||||||||| |||||||||||    
T  24753261 caaacccagtcaaaacggagaaaatccgtcaaattgaatttggttcggacgggtaaccacgggtatgggttttgttgccatgcctaatt 24753349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 43550573 - 43550497
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    ||||||| ||| | ||||| ||||||||||||||| ||| | |||||||| ||||||| |||||| ||||| |||||    
T  43550573 tgaaatgatttagggtttgggtttctatttatatagaaggggtaataaatagactttccacattcaggacgggtttg 43550497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 22973397 - 22973464
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg 266  Q
    |||||||||||||| | |||||||||| ||||| |  ||| |||||| ||||| ||||||||||||||    
T  22973397 tttgggtatgggttcgaggtgggtacagatatccccattacccgtcccgtacccgtattttgaaatcg 22973464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 38152900 - 38153038
Alignment:
Q  203 ggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaag 301  Q
    |||||||||| ||||||||||| |||||  | ||||||||| |  ||||  | |||||||||||| | ||||  | || ||||| ||||| ||||||||     
T  38152900 ggtatgggttcggggtgggtacctatatagccgttatccgttccatacccatgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaa 38152999  T
Q  302 cggagaaaacccgttaaattgagtttggttcaggcaggta 341  Q
    ||| ||||| |||| |||||||||||||||| ||| ||||    
T  38153000 cgg-gaaaatccgtcaaattgagtttggttcgggcgggta 38153038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 363
Target Start/End: Original strand, 16079022 - 16079187
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    ||||||||| ||||||||||||| || |||||  | |||| ||||||  |||| || |||||| ||||||| ||||  ||||| |||| ||||| |||||    
T  16079022 tttgggtataggtttggggtgggcacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaaacccaaacttatacccaaactcagtc 16079121  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttg 363  Q
    ||| | || ||||| ||| |||||  ||||| ||| ||| |||| || |  ||||| |||||||||    
T  16079122 aaaaccgaaaaaactcgtcaaattaggtttgcttcgggcgggtaaccacgagtatgggttttgttg 16079187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 23457157 - 23457202
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||||| |||||||||||| |||||||||| |||||| |||||||||    
T  23457157 caaacccagtcaaagcggggaaaacccgtcaaattgggtttggttc 23457202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 23533611 - 23533526
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| |||||||| |||  ||||||||| |||||| ||||||||| ||  |||| ||||  |||||  |||||||||||||||||    
T  23533611 caaacccagtcaaatcgggaaaaacccgtcaaattgggtttggttcgggagggtacccgcgggtatggattttgttgtcatgccta 23533526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 2973 - 3081
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||| ||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||| | ||||  |||||||||| ||||| |||||    
T  2973 tttgagtatgggttcggggtgggtacatatatcccagttatccgtcctgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccagtc 3072  T
Q  298 aaagcggag 306  Q
    ||| |||||    
T  3073 aaatcggag 3081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 207 - 320
Target Start/End: Complemental strand, 31416008 - 31415894
Alignment:
Q  207 tgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtcaaagcgga 305  Q
    |||||| |||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||| |  ||||| ||||  |||| |||||||| |||     
T  31416008 tgggttcggggtgggtacatatatccctgttatccatcccgtacccgtattttgaaatcggagaaaatccaaacttatacctaaacccagtcaaatcggg 31415909  T
Q  306 gaaaacccgttaaat 320  Q
    |||||||||||||||    
T  31415908 gaaaacccgttaaat 31415894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 14606010 - 14605902
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||  ||||| ||||||||||||||||| ||||  |||| ||||| ||||| |||||    
T  14606010 tttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtc 14605911  T
Q  298 aaagcggag 306  Q
    ||| |||||    
T  14605910 aaatcggag 14605902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 372
Target Start/End: Complemental strand, 12075777 - 12075543
Alignment:
Q  127 gagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttggggtgggtacat 226  Q
    |||||| |||||||||||||||||||  | ||||||||||| |||| |||||| |||||||||||            ||| | |||||||||||||||||    
T  12075777 gagttttagtttctatttatataaaatgggtaataaattgattttctacattccggacgagtttga-----------gtacgagtttggggtgggtacat 12075689  T
Q  227 atatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagt 325  Q
    || || || ||| | |||  ||||| || ||||||||| ||| ||| || |||||||||| ||||| |  |||||||||| ||||||||| |||||||||    
T  12075688 atctccctattacctgtcacgtacccgtgttttgaaattggaaaaaactcaaactcatacccaaacccgatcaaagcgga-aaaacccgtcaaattgagt 12075590  T
Q  326 ttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||  || | |||||| || ||| |||| ||||| ||||||||||||    
T  12075589 ttgaatcggacaggtacccacatatatgggttttattgtcatgccta 12075543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 6382357 - 6382183
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || |||||| |||||||||| |  | || ||||| ||||| |||||    
T  6382357 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaaacccatacccatacccaaacccagtc 6382258  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||||| |||||||||| |||||| ||||| ||| ||| |||| || |  ||||| ||||| ||| ||||||||    
T  6382257 aaagcggggaaaacccgtcaaattgggtttgattcgggcgggtaaccacgggtatgggttttattgccatgccta 6382183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 376
Target Start/End: Complemental strand, 11122954 - 11122776
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||| ||||||||| ||||||||||| |||||  | |||| ||||||  |||| || ||| || |||||||||| |  | || ||||| ||||| |||||    
T  11122954 tttgagtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggagaaaacccatacccatacccaaactcagtc 11122855  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattg 376  Q
    ||| |||| |||| |||| |||||||||||||||| ||| |||| || |  ||||| ||||||||| ||||||||||||    
T  11122854 aaaacggaaaaaatccgtcaaattgagtttggttcgggcgggtaaccacgggtatgagttttgttgccatgcctaattg 11122776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 19883141 - 19882967
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||| |||| |||| ||||||| ||| |||||| | |||| || ||| ||| | || |||| ||||||| |||| |  |||||||||||||||| || ||    
T  19883141 tttgtgtatcggttcggggtggatacctatatccccgttacccttcccgtatccgtgttttaaaatcggggaaaacccaaactcatactcaaacccaatc 19883042  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||||||  ||||||||| |||||| ||||||||| ||| ||||| |||  ||||| ||||||||| ||||||||    
T  19883041 aaagcgggaaaaacccgtcaaattgggtttggttcgggcgggtattcgcgagtatgggttttgttgccatgccta 19882967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 47550438 - 47550264
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  |||||| ||||||  |||| || |||||| ||||| |||| || | ||  |||| ||||| |||||    
T  47550438 tttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaactcatacctatacccaaacccagtc 47550339  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||  || ||||| |||  |||||||||||||||| ||| |||| || |||||||| ||||||||  ||||||||    
T  47550338 aaaatggggaaaatccgccaaattgagtttggttcgggcgggtaaccacatgtatgggttttgtttccatgccta 47550264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36919060 - 36919137
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||| |||| |||| ||| ||||||||||    
T  36919060 tgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacatccggaacgagtttgg 36919137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 374
Target Start/End: Original strand, 11028083 - 11028259
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||| ||||||||||| |||||  | |||| ||||||  |||| || |||||| ||||| |||| |  | || ||||| ||||  |||||    
T  11028083 tttgggtatgagttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaatccagtc 11028182  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||| |||||||||||||| |||||| ||||||||| ||  |||| || | |||||| ||||||||| ||||||||||    
T  11028183 aaaacggagaaaacccgtcaaattgggtttggttcgggtgggtaaccacgtgtatgggttttgttgccatgcctaat 11028259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 26564841 - 26565016
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    ||||||||||| || ||||||||||| |||||  | |||| ||||||  |||| |  |||||||||||| |||| || |||||||||| ||||| |||||    
T  26564841 tttgggtatggtttcggggtgggtacctatatacccgttacccgtcccatacccgcgttttgaaatcggggaaagctcaaactcatacccaaacccagtc 26564940  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||| || |||||| |||| ||||||  |||||||| ||  |||| || |  ||||| ||||||||| |||||||||    
T  26564941 aaaacgaagaaaatccgtcaaattggatttggttcgggtgggtaaccacgggtatgggttttgttgccatgcctaa 26565016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 7334244 - 7334107
Alignment:
Q  236 ttatccgtcctgtacctgtattttgaaatcggagaaactgaaactc-atactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcag 334  Q
    |||||||||| ||||| || |||||||||||| |||| |  || || |||| ||||| ||||||||||||  ||||||||| |||||  |||||||||||    
T  7334244 ttatccgtcccgtacc-gtgttttgaaatcggggaaaatccaaatccatacccaaacccagtcaaagcgggaaaaacccgtcaaattaggtttggttcag 7334146  T
Q  335 gcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    || | || ||||| ||||| ||||||||| |||||||||    
T  7334145 gcggatacccgcaagtatgggttttgttgccatgcctaa 7334107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 7334341 - 7334266
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| ||||||||||||||||||||| ||| |  |||||||||||| |||||||||| |||||||||||||    
T  7334341 tgaaatgatttagagtttgagtttctatttataaaaacg--ataataaattgattttcaacatttgggacgagtttgg 7334266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 5902699 - 5902531
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtca 298  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || ||| || ||||| ||||     || ||||| ||||| ||||||    
T  5902699 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaa-----acccatacccaaacccagtca 5902605  T
Q  299 aagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    || ||| |||||||||| |||||||||||||||| ||| |||| || |  ||||  ||||||||| ||||||||    
T  5902604 aaacggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtataggttttgttgccatgccta 5902531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 29527822 - 29527895
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| |||||||||||||||||| | |||| |||||  ||||| ||||||||||||||| ||||    
T  29527822 tttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaa 29527895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 30266415 - 30266346
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgga 268  Q
    |||||||||||||| ||||||| |||||||||| | |||| |||||||||||| ||||| ||||||||||    
T  30266415 tttgggtatgggttcggggtggatacatatatccccgttacccgtcctgtacccgtattatgaaatcgga 30266346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 30285773 - 30285842
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgga 268  Q
    |||||||||||||| ||||||| |||||||||| | |||| |||||||||||| ||||| ||||||||||    
T  30285773 tttgggtatgggttcggggtggatacatatatccccgttacccgtcctgtacccgtattatgaaatcgga 30285842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 42907824 - 42907900
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| | ||||||||||||||||||||||||| | || |||||||| |||| |||||||||||||||||||    
T  42907824 tgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttctacattcgggacgagtttgg 42907900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 17113092 - 17112972
Alignment:
Q  213 tggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtcaaagcggagaaaacc 312  Q
    |||||||||| | ||||||||| ||| ||||   ||||| || ||||  ||||||||||| | |||||||| | ||||| |||||||||||||||||| |    
T  17113092 tggggtgggtgcctatatctcttttacccgtatcgtacccgtgttttagaatcggagaaaatcaaactcattcccaaactcagtcaaagcggagaaaatc 17112993  T
Q  313 cgttaaattgagtttggttca 333  Q
    ||| |||||| ||||| ||||    
T  17112992 cgtcaaattgtgtttgattca 17112972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 43309511 - 43309610
Alignment:
Q  217 gtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtcaaagcggagaaaacccgt 315  Q
    ||||| ||||||| | | |||| ||||||  |||| || |||||||||||| | ||||  |||||||||||||||| |||||||||||||||||||||||    
T  43309511 gtgggcacatataaccccgttacccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatactcaaacccagtcaaagcggagaaaacccgt 43309610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 373
Target Start/End: Complemental strand, 4741359 - 4741127
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatgaatttgggtatgggtttggggtgggtacatat 228  Q
    ||||||||||||||||||||||||  ||||||||||||| |||  |||||||| ||| ||||        ||   ||||||||| ||||||||||| |||    
T  4741359 gtttgagtttctatttatataaaatggataataaattga-tttatacattcggaacgggttt--------tt---gtatgggttcggggtgggtacttat 4741272  T
Q  229 atctctgttatccgtcctgtacctgtattttgaaatcg-gagaaactgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagttt 327  Q
    ||| |||||||||||||  ||||  | |||| |||||| |  ||||| |||||||||  ||||| |||||||| ||| ||||||  || || ||  ||||    
T  4741271 atccctgttatccgtcccatacccatgttttaaaatcgaggaaaactcaaactcatatccaaactcagtcaaa-cggggaaaacttgtcaatttatgttt 4741173  T
Q  328 ggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||||| | | | || ||||||||||| |||||||||||||| ||||    
T  4741172 ggttcggacggatacccgcatgtatgagttttgttgtcatgtctaa 4741127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 25265167 - 25265080
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||    |||||||| |||| ||||||||| ||||||||    
T  25265167 catacccaaacgcagtcaaagcggaaaaaacccgtcaaattaagtttagttcaggc----atccgcatatatgagttttgttgccatgccta 25265080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 10574504 - 10574431
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||| ||| |||| ||||||||||||| | |||| |||||| ||||||||||| ||||||||| ||||    
T  10574504 tttgggtatgagttcggggcgggtacatatatccccgttacccgtcccgtacctgtattatgaaatcggggaaa 10574431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 31782623 - 31782696
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||| |||||||||||||||||||||| | |||| | || | ||||| ||||||||||||||| ||||    
T  31782623 tttgggtatgagtttggggtgggtacatatatccccgttacctgtaccgtacccgtattttgaaatcggggaaa 31782696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 21544589 - 21544657
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg 267  Q
    |||||||||||||| |||||||||||||||||| |  ||| | |||| ||||| |||||||||||||||    
T  21544589 tttgggtatgggttcggggtgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgg 21544657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 42299888 - 42299972
Alignment:
Q  288 aaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||| |||||||| |||| ||||||||| |||||||||||||||| |   |||| |||||| ||||  |||||||||||||||||    
T  42299888 aaactcagtcaaaccggaaaaaacccgtcaaattgagtttggttcggatgggtaaccgcatatatgaattttgttgtcatgccta 42299972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 21714133 - 21714058
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagttt 190  Q
    ||||||| ||| | ||||||||||||||||||||||||| | ||||||||| | |||| ||||| | |||||||||    
T  21714133 tgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagttt 21714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 221 - 331
Target Start/End: Original strand, 30672993 - 30673104
Alignment:
Q  221 gtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtcaaagcggagaaaacccgttaaa 319  Q
    ||||||||||| |  |||||||||| ||||| ||||||| |||||||||||| |  |||||||||| ||||| || ||||| | | |||||||||| |||    
T  30672993 gtacatatatccccattatccgtcccgtacccgtattttaaaatcggagaaaatccaaactcatacccaaacccaatcaaatcagggaaaacccgtcaaa 30673092  T
Q  320 ttgagtttggtt 331  Q
    ||| | ||||||    
T  30673093 ttgtggttggtt 30673104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 36306743 - 36306798
Alignment:
Q  136 tttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    |||||||||||||||||| | ||||||||||| |||| |||||||||||| |||||    
T  36306743 tttctatttatataaaaggggtaataaattgattttctacattcgggacgggtttg 36306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 45065259 - 45065326
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg 266  Q
    |||||||||| ||| ||| |||||||||||||| ||||||  ||||| ||||| ||||||||||||||    
T  45065259 tttgggtatgcgttcgggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatcg 45065326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 24474582 - 24474524
Alignment:
Q  132 tgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagttt 190  Q
    |||||||||||||||||||||| ||||| || |||| |||  |||||||||||||||||    
T  24474582 tgagtttctatttatataaaagggataaaaatttgattttttacattcgggacgagttt 24474524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 25265302 - 25265229
Alignment:
Q  117 aaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    ||||| ||| || |||||||||||||||||||| ||| ||||||||||||| |||| ||||||| || |||||||    
T  25265302 aaatgatttagaatttgagtttctatttatatagaag-gataataaattgattttctacattcgagatgagtttg 25265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 39665720 - 39665758
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaag 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  39665720 tgaaatggttttgagtctgagtttctatttatataaaag 39665758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 43553412 - 43553458
Alignment:
Q  144 tatataaaagtgataataaattgactttcaacattcgggacgagttt 190  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||    
T  43553412 tatataaaaggggtaataaattgattttcaacattcgggacgagttt 43553458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 39086227 - 39086300
Alignment:
Q  259 tgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggtt 331  Q
    |||||||||||||| || |||||||||  ||||| || ||||| ||||||||| |||| |||||||||||||||    
T  39086227 tgaaatcggagaaaactcaaactcatatccaaacccaatcaaaacggagaaaatccgtcaaattgagtttggtt 39086300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 47103748 - 47103813
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaat 264  Q
    |||||||||||||| ||||||||||||||||||   |||| ||| || ||||| ||||||||||||    
T  47103748 tttgggtatgggttcggggtgggtacatatatccgcgttacccgccccgtacccgtattttgaaat 47103813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 375
Target Start/End: Complemental strand, 7985206 - 7985034
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactg-aaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||| || ||||||| ||    |||||||||||  ||||  | ||||||||||||||||| |  ||||| |||| ||||| || ||    
T  7985206 tttgggtatgggttcgggatgagtacatacat----gttatccgtcccatacccatgttttgaaatcggagaaaatccaaacttatacccaaacccaatc 7985111  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||| |   |||||||||| |||||| ||||||||||||| | || || ||  |||| ||||||||| |||||||||||    
T  7985110 aaaaccaggaaaacccgtcaaattgggtttggttcaggcggataaccaca-atatgagttttgttgacatgcctaatt 7985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 15733596 - 15733544
Alignment:
Q  214 ggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg 266  Q
    |||||||||||||||||||| |||| |||||  ||||| ||||||||||||||    
T  15733596 ggggtgggtacatatatctccgttacccgtctcgtacccgtattttgaaatcg 15733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 25941148 - 25941284
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| ||| |  | |||| | |||| ||||| || |||||||||| ||| ||||  |||| ||| | |||||  | ||    
T  25941148 tttgggtatgggttcggggtgggtacctatcttcccgttacctgtcccgtacccgtgttttgaaatcgggaaaaacccaaacacatgcccaaaccaaatc 25941247  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcag 334  Q
    |||| || |||||||| ||||||||||||| ||||||    
T  25941248 aaagtggggaaaacccattaaattgagtttagttcag 25941284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 36919211 - 36919307
Alignment:
Q  276 aaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||||||||| ||||| |||| ||||||   ||||||||| |||||||||||||||| |    ||| ||||  ||||| ||||||||||||||||||    
T  36919211 aaactcatacccaaacccagttaaagcgagaaaaacccgtcaaattgagtttggttcggatgcgtacccgcgagtatgagttttgttgtcatgccta 36919307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 30034611 - 30034693
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttggtatga 197  Q
    ||||||| ||| | ||||| ||||||||||||||||| | | || |||||||| ||| |||||||| ||||  ||||||||||    
T  30034611 tgaaatgatttagggtttgggtttctatttatataaatgaggtagtaaattgatttttaacattcgagacggatttggtatga 30034693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 10302096 - 10302209
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaa 299  Q
    |||||||||||| |||||||||||||||| | | |||| |||||   |||| ||| ||||||||||| | ||||  |||| ||||| ||||| || ||||    
T  10302096 tgggtatgggttcggggtgggtacatataaccccgttacccgtctcatacccgtactttgaaatcggggaaaacctaaacccatacccaaacccaatcaa 10302195  T
Q  300 agcggagaaaaccc 313  Q
    | ||| ||||||||    
T  10302196 aacggggaaaaccc 10302209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 21956971 - 21956895
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| | ||||| |||| |||||||||||||| | ||||||||||| |||| |||||||  ||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttctacattcgtaacgagtttgg 21956895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 25298990 - 25298914
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||| ||| ||||||||||| ||||||||| ||||| | | ||||||||| |||||||||| || ||| ||||||    
T  25298990 tgaaatgatttagagtttgagtt-ctatttataaaaaaggggtgataaattgattttcaacatttggtacgggtttgg 25298914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 43553539 - 43553580
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattg 322  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  43553539 catacccaaactcagtcaaagcggagaaaacccgtcaaattg 43553580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 211368 - 211476
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||  ||||| ||||||||||||||||| ||||  |||| ||||| ||||| |||||    
T  211368 tttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtc 211467  T
Q  298 aaagcggag 306  Q
    ||| |||||    
T  211468 aaatcggag 211476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 202 - 377
Target Start/End: Original strand, 37106700 - 37106876
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaa 300  Q
    ||||||||||| || |||||||| |||||  | |||| ||||||  |||| || |||||||||||| |||| |  | || ||||| ||||| ||||||||    
T  37106700 gggtatgggttcggagtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaa 37106799  T
Q  301 gcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaattgt 377  Q
     ||| |||||||||| |||||| ||||||||| ||| |||| ||||  ||||| |||||||||||||||||| ||||    
T  37106800 acggggaaaacccgtcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgtcatgcctacttgt 37106876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 24414216 - 24414046
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  |||||| ||||||  |||| || |||||| ||||| | |||| || || ||||| ||||| || ||    
T  24414216 tttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaaccgatacccatacccaaacccaatc 24414117  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    ||| ||| |||||||||| |||||| ||||||||| ||| |||| || || ||||| ||||||||| ||||    
T  24414116 aaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacaggtatgggttttgttgccatg 24414046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 30846951 - 30847128
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || ||| || ||||| |||| |  | || ||||| ||||| |||||    
T  30846951 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacccagtc 30847050  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||| ||| |||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| |||||||||||    
T  30847051 aaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaatt 30847128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 3547171 - 3547239
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg 267  Q
    ||||| |||||||| |||||||||||||||||||| |||| |||||| ||||| |||||||||||||||    
T  3547171 tttggatatgggttcggggtgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcgg 3547239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 43371558 - 43371660
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||| |||||||||||||||||||||| | |||| |||||| ||||| ||||||| ||||||| | ||||| ||||  |||| ||||| |||||    
T  43371558 tttgggtatgagtttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaactcaaaccaatacccaaactcagtc 43371657  T
Q  298 aaa 300  Q
    |||    
T  43371658 aaa 43371660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 362
Target Start/End: Complemental strand, 37472840 - 37472679
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaa-actcatactcaaacacagtcaaa 300  Q
    ||||||||||| |  |||||||| || ||  | |||| ||||||  |||| || |||||||||||| |||| |  | |||||||| ||||| ||||||||    
T  37472840 gggtatgggttcgaagtgggtacctaaatacccgttacccgtcccatacccgtgttttgaaatcggggaaaatccatactcatacccaaacccagtcaaa 37472741  T
Q  301 gcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgtt 362  Q
     ||| |||||||||| |||||||||||||||| ||| |||| | ||  ||||| ||||||||    
T  37472740 acggggaaaacccgtcaaattgagtttggttcgggcgggtaactgcgggtatgggttttgtt 37472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 38342603 - 38342530
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| |||||||||||||||||| | |||| |||||| ||| | ||||||| ||||||| ||||    
T  38342603 tttgggtatgggttcggggtgggtacatatatccccgttacccgtcccgtatccgtattttaaaatcggggaaa 38342530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 9632474 - 9632565
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||||||||| || ||||| |||  ||||||||| |||||||||||||||| ||| |||| || |  ||||| ||||||||| ||||||||    
T  9632474 catactcaaacccattcaaaacgggaaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 9632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 18485653 - 18485720
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcg 266  Q
    ||||||||||||||  ||||||||||||||||| | |||| |||| ||||||| ||||||| ||||||    
T  18485653 tttgggtatgggttcagggtgggtacatatatccccgttacccgtactgtacccgtattttaaaatcg 18485720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 31942270 - 31942095
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtatttt-gaaatcggaga-aactgaaactcatactcaaacacagt 296  Q
    ||||| |||||||||||||||||||| |||||  |||||| |||||   |||| || |||| |||||||  || |||  |||| ||||  ||||| ||||    
T  31942270 tttggttatgggtttggggtgggtacttatatacctgttacccgtctcatacccgtgtttttgaaatcgaggataacccaaacccatatccaaacccagt 31942171  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||||||  ||||||| | |||||||||||||||  ||| |||| || |  ||||| ||||||||||||| ||||    
T  31942170 caaagcgggaaaaacccatcaaattgagtttggtttgggcgggtaaccacgggtatgggttttgttgtcataccta 31942095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 373
Target Start/End: Original strand, 12341654 - 12341780
Alignment:
Q  248 tacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgc 346  Q
    ||||||| |||||||||||| | ||||  | || ||||| ||||| |||||||| ||| |||||||||| |||||| ||||||||| | | | || ||||    
T  12341654 tacctgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgggtttggttcggacggataaccgc 12341753  T
Q  347 atgtatgtgttttgttgtcatgcctaa 373  Q
      ||||| ||||||||| |||||||||    
T  12341754 gggtatgagttttgttgccatgcctaa 12341780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 13531881 - 13531943
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacat 177  Q
    ||||||| ||| | ||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  13531881 tgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 24051705 - 24051635
Alignment:
Q  202 gggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    ||||||||||| ||||| |||||||||||| |||||| ||||||  |||  ||||||| ||||||||||||    
T  24051705 gggtatgggttcggggtaggtacatatatccctgttacccgtcccatactcgtattttaaaatcggagaaa 24051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 30978932 - 30979032
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||| ||||||||||   ||||||| ||| ||||| ||||||||||||| ||| ||||  ||||||||| |||||| |||||    
T  30978932 tttgggtatgggttcggggtggatacatatatcctcgttatcc-tcc-gtacccgtattttgaaatcgggaaaaacccaaactcatattcaaacccagtc 30979029  T
Q  298 aaa 300  Q
    |||    
T  30979030 aaa 30979032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 13954623 - 13954753
Alignment:
Q  70 gagaactatcataagtgcgtgtcaattgaaagtctgagac-------gagtt--tgaaatggttttgagtttgagtttctatttatataaaagtgataat 160  Q
    ||||||||||||||||| ||||||  ||||||||||||||       ||||   ||||||| ||| | ||| ||||||||||||||||||||||| ||||    
T  13954623 gagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaat 13954722  T
Q  161 aaattgactttcaacattcgggacgagtttg 191  Q
    || |||| |||| || |||| |||| |||||    
T  13954723 aagttgattttctacgttcgagacgggtttg 13954753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 14095830 - 14095960
Alignment:
Q  70 gagaactatcataagtgcgtgtcaattgaaagtctgagac-------gagtt--tgaaatggttttgagtttgagtttctatttatataaaagtgataat 160  Q
    ||||||||||||||||| ||||||  ||||||||||||||       ||||   ||||||| ||| | ||| ||||||||||||||||||||||| ||||    
T  14095830 gagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaat 14095929  T
Q  161 aaattgactttcaacattcgggacgagtttg 191  Q
    || |||| |||| || |||| |||| |||||    
T  14095930 aagttgattttctacgttcgagacgggtttg 14095960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 14331532 - 14331597
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaat 264  Q
    |||||||||||||| || ||||||||||||||| | |||| ||||||  |||||||||||| ||||    
T  14331532 tttgggtatgggttcggagtgggtacatatatccccgttacccgtcccatacctgtatttttaaat 14331597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 30696929 - 30696974
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtc 244  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||||    
T  30696929 tttgggtatgagttcggggtgggtacatatatctctgttacccgtc 30696974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 25210309 - 25210377
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcggga 183  Q
    ||||||| ||| | ||||||||||||||||||||||||  | ||| ||||||| |||| ||||||||||    
T  25210309 tgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcggga 25210377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 13830823 - 13830914
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| ||||||||  || |||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||||||| ||||    
T  13830823 catacccaaacccagtcaaaatggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcataccta 13830914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 44057887 - 44057954
Alignment:
Q  199 tttgggtatgggtttgggg-tgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc 265  Q
    |||||||||||||| |||| |||||||||||||| |  ||| |||||| ||||| |||||||||||||    
T  44057887 tttgggtatgggttcgggggtgggtacatatatccccattacccgtcccgtaccggtattttgaaatc 44057954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 31600925 - 31600887
Alignment:
Q  115 tgaaatggttttgagtttgagtttctatttatataaaag 153  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  31600925 tgaaatgatttagagtttgagtttctatttatataaaag 31600887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 34544283 - 34544233
Alignment:
Q  321 tgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcct 371  Q
    |||||||||||| |||||||| ||||  ||||| |||||||||||||||||    
T  34544283 tgagtttggttctggcaggtacccgctggtatgagttttgttgtcatgcct 34544233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 37309874 - 37309812
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttg 191  Q
    |||||| ||||||||||| |||||| ||| ||||||||| |||| || ||||||||| |||||    
T  37309874 gtttgaatttctatttatgtaaaagggatgataaattgattttctaccttcgggacgggtttg 37309812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 6027896 - 6027811
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| || ||||| ||| |||||||||| |||||| ||||||||| ||| | || || |  ||||| ||||||||||||||||||    
T  6027896 caaacccaatcaaaacggggaaaacccgtcaaattgggtttggttcgggcggataaccacgagtatgggttttgttgtcatgccta 6027811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 18106114 - 18106029
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaa-ttgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcct 371  Q
    ||||| |||||||| ||| ||||| |||| ||| ||||||||| ||| ||| |||| || ||| |||| |||||||||||||||||    
T  18106114 caaacccagtcaaaacggggaaaatccgtcaaaattgagtttgattcgggcgggtaaccacatatatgagttttgttgtcatgcct 18106029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 199 - 373
Target Start/End: Complemental strand, 39655357 - 39655182
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||||||||||||||| |||||  |||||| ||||||  |||| || |||||| ||||| | ||||  | || ||||| ||||| || ||    
T  39655357 tttgggtatgggtttggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccaatc 39655258  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||| ||| |||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| |||||||||    
T  39655257 aaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 39655182  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 54317148 - 54317291
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||| ||||||| ||||||||||| |||||  | |||| ||||||| ||| ||| |||||||||||| |||| || |||| ||||||||||| |||||    
T  54317148 tttgggaatgggttcggggtgggtacctatatacccgttacccgtcctatacttgtgttttgaaatcggggaaaactcaaacacatactcaaacccagtc 54317247  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggta 341  Q
    ||| ||| |||||||||| ||||||  |||||||| ||| ||||    
T  54317248 aaaacggggaaaacccgtcaaattggatttggttcgggcgggta 54317291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 375
Target Start/End: Complemental strand, 23547026 - 23546855
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtca 298  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || ||| || ||||| ||||     || ||||| ||||| ||||||    
T  23547026 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaa-----acccatacccaaacccagtca 23546932  T
Q  299 aagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    || ||| ||||||||||||||||| |||||||||| || |||| || |  ||||| ||||||||| |||||||||||    
T  23546931 aaacggggaaaacccgttaaattgggtttggttcatgcgggtaaccacgggtatgggttttgttgccatgcctaatt 23546855  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 42758378 - 42758552
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||  ||| |||||  |||||| ||||||  ||||||| |||||||||| || |||||  |||||||||| ||||| ||||     
T  42758378 tttgggtatgggttcggggtgcatacctatatacctgttacccgtcccatacctgtgttttgaaatcgggggaaacccaaactcatacccaaacccagtt 42758477  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| ||| ||||| |||| |||||| |||||| || ||| |||| || |  ||||| ||||||||| ||||||||    
T  42758478 aaaacggggaaaatccgtcaaattgggtttggatcgggcgggtaaccacgggtatgggttttgttgccatgccta 42758552  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 374
Target Start/End: Original strand, 29284340 - 29284516
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||| ||||||| |||||  | |||| ||||||  |||| || ||| || ||||| | ||||  | || ||||| ||||| |||||    
T  29284340 tttgggtatgggttcgggctgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcgggaaaaacccatacccatacccaaacccagtc 29284439  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||| |||||||||||||| |||||| ||||||||| ||| |||| || |  ||||| ||||||||| ||||||||||    
T  29284440 aaaacggagaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttgccatgcctaat 29284516  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 34119659 - 34119783
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagt 296  Q
    ||||||||||||||| ||||||||||| |||||  ||||||||||||   |||| || |||| ||||| ||| ||||| |||||||||| ||||| || |    
T  34119659 atttgggtatgggttcggggtgggtacctatatacctgttatccgtctcatacccgtgttttaaaatcgggaaaaactcaaactcatacccaaacccaat 34119758  T
Q  297 caaagcggagaaaacccgttaaatt 321  Q
    ||||  || |||||||||| |||||    
T  34119759 caaaatggggaaaacccgtcaaatt 34119783  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 23580914 - 23581001
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatg 368  Q
    ||||| ||||| |||||||| |||  ||||||||| ||||||| |||  ||| |||||||| ||||| ||||||||||||||||||||    
T  23580914 catacccaaacccagtcaaaacgggaaaaacccgtcaaattgaatttaattcgggcaggtaaccgcaggtatgtgttttgttgtcatg 23581001  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 4016128 - 4015954
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| || |||||||| |||||  | |||||||||||  ||||  | |||||||||||| | ||||  |||| ||||| |||||  ||||    
T  4016128 tttgggtatgggttcggagtgggtacctatatacccgttatccgtcccatacccatgttttgaaatcggggaaaacccaaacccatacccaaacctagtc 4016029  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| |||  ||||||||| ||||||||||| |||| ||  |||| || |  ||||| ||||||||| ||||||||    
T  4016028 aaaacgggaaaaacccgtcaaattgagtttcgttcgggtgggtaaccacgggtatgggttttgttgccatgccta 4015954  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 35687571 - 35687473
Alignment:
Q  203 ggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaa 300  Q
    ||||||| |||||| | |||||||||||| | |||| |||||  ||||| ||||| ||||||||| | ||||| |||||||||||||||| ||||||||    
T  35687571 ggtatggatttgggataggtacatatatcacagttacccgtctcgtacccgtattatgaaatcggggaaaactcaaactcatactcaaacccagtcaaa 35687473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 373
Target Start/End: Complemental strand, 4557390 - 4557214
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatat-ctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacag 295  Q
    ||||||||||||||| ||||||||||| ||||| ||| |||| ||||||  ||||  | |||||||| ||| |||| |  |||| ||||| ||||| |||    
T  4557390 atttgggtatgggttcggggtgggtacctatatactc-gttacccgtcccatacccatgttttgaaaacggggaaaacccaaacccatacccaaacccag 4557292  T
Q  296 tcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||||| |||  ||||||||| |||||| |||| |||| ||  |||| || |  ||||| |||||||||||||||||||    
T  4557291 tcaaaacgggaaaaacccgtcaaattgggttttgttcgggtgggtaaccacgggtatgagttttgttgtcatgcctaa 4557214  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 19111738 - 19111840
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||| |||||||| |||||||||| |||||  | ||||||| ||| ||||| || |||||||||| ||| ||||| |||||||||| ||||| || ||    
T  19111738 tttgggcatgggtttagggtgggtacttatatacccgttatccatcccgtacccgtgttttgaaatcgggaaaaactcaaactcatacccaaacccaatc 19111837  T
Q  298 aaa 300  Q
    |||    
T  19111838 aaa 19111840  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 22535842 - 22535748
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||||| ||||| |||||||| ||| |||||||| | |||||||||||||||| ||| | || ||||  ||||| ||||||||| ||||| |||||    
T  22535842 catacccaaacccagtcaaaacggggaaaacccatcaaattgagtttggttcgggcggataaccgcgggtatgggttttgttgccatgcataatt 22535748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 42243469 - 42243527
Alignment:
Q  276 aaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcag 334  Q
    |||||||||| ||||| |||||||| ||| |||||||||| |||||| |||||||||||    
T  42243469 aaactcatacccaaacccagtcaaaccggggaaaacccgtcaaattgggtttggttcag 42243527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 29858570 - 29858485
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| |||||||| ||| ||||| ||||||||||| ||||||||| ||| |||| || |  ||||| ||||||||| ||||||||    
T  29858570 caaacccagtcaaaacggggaaaatccgttaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 29858485  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 374
Target Start/End: Original strand, 49580151 - 49580244
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||||| ||||| |||||||| ||| |||||||||| ||||||  |||||||| ||| | || || |  ||||| ||||||||||||||||||||    
T  49580151 catacccaaacccagtcaaaacggggaaaacccgtcaaattggatttggttcgggcggataaccacgggtatgggttttgttgtcatgcctaat 49580244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 52198159 - 52198292
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  ||||||| |||||| ||| ||| ||||  | || ||||| ||||| |||||    
T  52198159 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgttttgagatcgggaaaaacccatacccatacccaaacccagtc 52198258  T
Q  298 aaagcggagaaaacccgttaaattgagtttggtt 331  Q
    ||| | || ||||||||| |||||  ||||||||    
T  52198259 aaaacagaaaaaacccgtcaaattaggtttggtt 52198292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 40796221 - 40796129
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaac 291  Q
    ||||||||||  |||||||||||||||| ||||    ||| |||||| ||||| |||||||||||||||| ||||  |||| |||| ||||||    
T  40796221 tttgggtatgactttggggtgggtacatgtatcctcattacccgtcccgtacccgtattttgaaatcggaaaaacctaaacacatattcaaac 40796129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 40890290 - 40890340
Alignment:
Q  127 gagtttgagtttctatttatataaaagtgataataaattgactttcaacatt 178  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||    
T  40890290 gagtttgagtttctatttatatagaag-gataataaattgattttctacatt 40890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 6738406 - 6738312
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaatt 375  Q
    ||||| ||||| |||||||| |||  |||||| || |||||| ||||||||| ||| |||| ||||  ||||| ||||| ||| |||||||||||    
T  6738406 catacccaaacccagtcaaaacgggaaaaacctgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttattgccatgcctaatt 6738312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 372
Target Start/End: Complemental strand, 44106797 - 44106704
Alignment:
Q  278 actcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||||||| ||||| |||||||| ||| ||||||| || ||||||||||| |||| ||| ||||  | |  ||||||||||||||| ||||||||    
T  44106797 actcatacccaaacccagtcaaaacggggaaaacc-gtcaaattgagttttgttcgggcgggtaatcacgggtatgtgttttgttgccatgccta 44106704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 201 - 374
Target Start/End: Complemental strand, 48390899 - 48390725
Alignment:
Q  201 tgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaa 299  Q
    ||||||||||||  || ||||||| |||||  | |||| ||||||  |||| || |||||||||||| | ||||  | || ||||| ||||| |||||||    
T  48390899 tgggtatgggttcaggatgggtacctatattcccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaa 48390800  T
Q  300 agcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    | ||| ||||| |||| ||||||  ||||||||   | |||| ||||  ||||| ||||||||| ||||||||||    
T  48390799 aacggggaaaatccgtcaaattggatttggttcgaacgggtaaccgcgggtatgggttttgttgccatgcctaat 48390725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 4553194 - 4553331
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtc 297  Q
    |||| ||||||||| |||||| |||  |||||| || ||| |||| | | |||  | |||||||||||| | ||||| |||| |||||  || | |||||    
T  4553194 tttgagtatgggttcggggtgtgtatttatatccctattacccgttccgcacccatgttttgaaatcgggaaaaactcaaacgcatacctaagcccagtc 4553293  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcagg 335  Q
    |||||||||||||||| | || || |||||||||||||    
T  4553294 aaagcggagaaaacccataaatttcagtttggttcagg 4553331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 10371268 - 10371183
Alignment:
Q  287 caaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| |||||||| ||| |||||||||| |||||| |||||||||  || |||| || |  || || ||||||||||||||||||    
T  10371268 caaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgagcgggtaaccacgggtctgggttttgttgtcatgccta 10371183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 372
Target Start/End: Original strand, 43582638 - 43582755
Alignment:
Q  256 ttttgaaatcggagaaa-ctgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgt 354  Q
    |||||||||||| |||| || | || ||||||||||| |||| ||| |||||||||||| | ||||||  |||||||| ||| |||| ||||   ||||     
T  43582638 ttttgaaatcggggaaaactcatacacatactcaaacccagtaaaaacggagaaaacccatcaaattggatttggttcgggcgggtaaccgcggatatgg 43582737  T
Q  355 gttttgttgtcatgccta 372  Q
    |||||||||  |||||||    
T  43582738 gttttgttgcaatgccta 43582755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 374
Target Start/End: Original strand, 52572696 - 52572789
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
    ||||| ||||| ||||||||  || ||||||| || |||||||||||||||| ||| | || || |  ||||| ||||||||| ||||||||||    
T  52572696 catacccaaacccagtcaaaatggggaaaacctgtcaaattgagtttggttcgggcggataaccacgggtatgggttttgttgccatgcctaat 52572789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 256576 - 256442
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||||||||||||||| |||||  |  ||| |||||  |||||  | |||||||||||| |||| || |||||||||| ||||||||  |    
T  256576 tttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcggggaaaactcaaactcatacccaaacacaacc 256477  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||||||| ||||| || ||||||||||||||||||    
T  256476 aaagcggggaaaatccattaaattgagtttggttc 256442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 198 - 331
Target Start/End: Original strand, 9458666 - 9458800
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagt 296  Q
    ||||||||||| ||| | |||||||||||||||| | |||||| |||| ||||| |||||||||||| || |||| || |||||||||| ||||| ||||    
T  9458666 atttgggtatgagttcgaggtgggtacatatatccccgttatctgtcccgtacccgtattttgaaattggggaaatctcaaactcatacccaaacccagt 9458765  T
Q  297 caaagcggagaaaacccgttaaattgagtttggtt 331  Q
    |||| ||| ||||| |||| |||| ||| ||||||    
T  9458766 caaatcggggaaaatccgtcaaatcgaggttggtt 9458800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 199 - 372
Target Start/End: Original strand, 27738776 - 27738950
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||  |||| || |||||||||||| | ||||  | || |||||  |||| |||||    
T  27738776 tttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacctaaacccagtc 27738875  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| |||  ||||||| | ||||||| |||||||| |||||||| ||||  ||||| | ||||||| ||| ||||    
T  27738876 aaaacgggaaaaacccatcaaattgaatttggttcgggcaggtaaccgcgagtatggggtttgttgacatcccta 27738950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 18908897 - 18909030
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||| ||||||||||||||||||||||  ||||| ||||||  || | ||||||||||||||| | ||||  |||||||||||||||| |||||    
T  18908897 tttgggtatgagtttggggtgggtacatatatccttgttacccgtcccatatccgtattttgaaatcggggaaaacccaaactcatactcaaactcagtc 18908996  T
Q  298 aaagcggagaaaacccgttaaattgagtttggtt 331  Q
    | | |||  |||| |||| |||| ||| ||||||    
T  18908997 acatcgggaaaaatccgtcaaatcgaggttggtt 18909030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 372
Target Start/End: Complemental strand, 28079781 - 28079606
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagt 296  Q
    ||||||||||||||| ||||||||||| |||||| | |||| |||||| |||||  | |||||||||||| | ||||  |||| ||||| ||||| |||     
T  28079781 atttgggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaaacccaaacccatacccaaactcagc 28079682  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||||||  || |||||| ||| || |||||||   ||  |||| ||||  ||||| ||||||||||||||||||    
T  28079681 caaagcgggaaatacccgtcaaaatgggtttggtatgggtgggtacccgcgggtatgggttttgttgtcatgccta 28079606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 363
Target Start/End: Complemental strand, 5863467 - 5863302
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| | ||||||||  |||||  | |||| ||||||  |||| || |||||||||||| | ||||  | || ||||| ||||| |||||    
T  5863467 tttgggtatgggttcgaggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtc 5863368  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttg 363  Q
    ||| ||| |||||||||| |||||| ||||||||| |||||||| || |  ||||| |||||||||    
T  5863367 aaaacggggaaaacccgtcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttg 5863302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 29199969 - 29199896
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| ||||| | |||||||||| |||||| |||||| ||||| ||||||||||||||| ||||    
T  29199969 tttgggtatgggttcggggtagatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaa 29199896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 30986340 - 30986432
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||| ||| |||| || |  ||||| ||||||||| |||||||||    
T  30986340 catacccaaactcagtcaaaacggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctaa 30986432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 32053092 - 32053218
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtca 298  Q
    ||||||||||||||||||||||||||||||||  | |||| ||||||  || |  | |||||||||||| ||     |||| ||||| ||||| ||||||    
T  32053092 tttgggtatgggtttggggtgggtacatatatacccgttacccgtcccatatccatgttttgaaatcgggga-----aaacccatacccaaacccagtca 32053186  T
Q  299 aagcggagaaaacccgttaaattgagtttggt 330  Q
    || ||| |||||||||| |||||| |||||||    
T  32053187 aaacggggaaaacccgtcaaattgggtttggt 32053218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 32853848 - 32853982
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| ||||||||||| |||||  | |||| ||||||  |||| || |||||| ||||| |||| |  | || ||||  ||||| |||||    
T  32853848 tttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtc 32853947  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttc 332  Q
    ||| |||||||||||||| |||||| |||||||||    
T  32853948 aaaacggagaaaacccgtcaaattgggtttggttc 32853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 374
Target Start/End: Original strand, 20349067 - 20349244
Alignment:
Q  198 atttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactg-aaactcatactcaaacacagt 296  Q
    ||||||||||| ||| ||||||||||| |||||| | ||||  |||||  |||| || |||||||||||| |||| |  ||||||||||  |||| || |    
T  20349067 atttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcataccaaaactcaat 20349166  T
Q  297 caaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaat 374  Q
     |||||||| ||     || |||||| ||||||||| |||||||| || || ||||| ||||| ||||||||||||||    
T  20349167 aaaagcggaaaattatagtcaaattgggtttggttcgggcaggtagccacaggtatgagttttattgtcatgcctaat 20349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 27534688 - 27534863
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    ||||||||||| || ||||||||||| |||||  | |||| ||||||  |||| || ||| || ||||| |||| || | || ||||| ||||| || ||    
T  27534688 tttgggtatggattcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactcatacccatacccaaacccaatc 27534787  T
Q  298 aaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgcctaa 373  Q
    ||| ||| |||||||||| |||||||||||||||| | | | || || |  ||||| ||||||||| |||||||||    
T  27534788 aaaacggggaaaacccgtcaaattgagtttggttcggacggttaaccacgggtatgggttttgttgccatgcctaa 27534863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 34179152 - 34179096
Alignment:
Q  129 gtttgagtttctatttatat-aaaagtgataataaattgactttcaacattcgggac 184  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||    
T  34179152 gtttgagtttctatttatataaaaagaggtaataaattgattttcaacattcaggac 34179096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 13769017 - 13769080
Alignment:
Q  129 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 192  Q
    ||||||||||| |||||||||||||   ||||||||||| |||| |||||| ||||| ||||||    
T  13769017 gtttgagtttcaatttatataaaaggagtaataaattgattttctacattcaggacgggtttgg 13769080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 31496521 - 31496612
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||  | | |||| || |  ||||| ||||||||| ||||||||    
T  31496521 catacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31496612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 372
Target Start/End: Original strand, 31501907 - 31501998
Alignment:
Q  281 catactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||  | | |||| || |  ||||| ||||||||| ||||||||    
T  31501907 catacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31501998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 256752 - 256714
Alignment:
Q  22 tgatggagaatagaaaggtcgagattgtgagatatggaa 60  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  256752 tgatggagaagagagaggtcgagattgtgagatatggaa 256714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 12678178 - 12678064
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtc 297  Q
    ||||||||||||||  |||||||||| |||||  |  ||| ||||||  ||||||| | |||||||||| | ||||  |||||||||| ||||| |||||    
T  12678178 tttgggtatgggttcagggtgggtacctatataccctttacccgtcccatacctgtgtcttgaaatcggggaaaacgcaaactcatacccaaacccagtc 12678079  T
Q  298 aaagcggagaaaacc 312  Q
    ||| ||| |||||||    
T  12678078 aaaacggcgaaaacc 12678064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 13769076 - 13769209
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa-ctgaaactcatactcaaacacagtc 297  Q
    ||||| ||||||||  |||||||||| ||||| || |||| ||||||  ||||  | ||||||| |||| |||| | ||||| |||||  |||| |||||    
T  13769076 tttggatatgggttctgggtgggtacctatatgtccgttacccgtcccatacccatgttttgaagtcggggaaaaccgaaacccatacctaaacccagtc 13769175  T
Q  298 aaagcggagaaaacccgttaaattgagtttggtt 331  Q
    ||||||   ||||||||| |||||| ||||||||    
T  13769176 aaagcgagtaaaacccgtgaaattgggtttggtt 13769209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 372
Target Start/End: Original strand, 32532549 - 32532718
Alignment:
Q  204 gtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggag-aaactgaaactcatactcaaacacagtcaaagc 302  Q
    ||||||||| ||||||||||| |||||  |  ||| ||||||  |||| || |||||||||||| | ||||  | |||||||||||||| || | ||| |    
T  32532549 gtatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcggggaaaacccatactcatactcaaacccaatgaaaac 32532648  T
Q  303 ggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    ||| ||||||||| ||||||  |||| ||  ||| | || |||||  ||||  |||||||||||||||||    
T  32532649 ggaaaaaacccgtcaaattggatttgatttgggcggataaccgcagatatggattttgttgtcatgccta 32532718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 10372 - 10468
Alignment:
Q  276 aaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgccta 372  Q
    |||| ||||| |||||  ||||||| |||| ||||||||| ||||||  |||||||| | |||||| ||||||||||| ||||||||||||||||||    
T  10372 aaacccatacccaaacctagtcaaaacggaaaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtcatgccta 10468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 67753 - 67867
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtc 297  Q
    ||||||||| || | |||||||||||||||||| | ||||||||||| ||| | ||||||| ||||||| |||| |  |||| ||||||||||| |||||    
T  67753 tttgggtataggctcggggtgggtacatatatccccgttatccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtc 67852  T
Q  298 aaagcggagaaaacc 312  Q
    ||| ||| |||||||    
T  67853 aaatcggggaaaacc 67867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 75596 - 75710
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaact-gaaactcatactcaaacacagtc 297  Q
    ||||||||| || | |||||||||||||||||| | ||||||||||| ||| | ||||||| ||||||| |||| |  |||| ||||||||||| |||||    
T  75596 tttgggtataggctcggggtgggtacatatatccccgttatccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtc 75695  T
Q  298 aaagcggagaaaacc 312  Q
    ||| ||| |||||||    
T  75696 aaatcggggaaaacc 75710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 70099 - 70192
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatc-ggagaaactgaaactcatactcaaac 291  Q
    |||||||||||||||||||||||||||||||||   |||| |||||| ||||| ||||| ||||||| ||| |||   ||||||||||||||||    
T  70099 tttgggtatgggtttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaatccaaactcatactcaaac 70192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 105553 - 105484
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgga 268  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||| ||||| |||||  |||||||||    
T  105553 tttgggtatgggttcggggtgggtacatatatccctgttacccgtcccgtacccgtattaagaaatcgga 105484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 128205 - 128103
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcgg-agaaactgaaactcatactcaaacacagtc 297  Q
    |||||||||||||| |||||||||||||||||| |  ||| |||||| ||||| ||||| |||||| || | ||||  |||||||||||||||| || ||    
T  128205 tttgggtatgggttcggggtgggtacatatatccccattacccgtcccgtacccgtattatgaaattggaaaaaacccaaactcatactcaaacccaatc 128106  T
Q  298 aaa 300  Q
    |||    
T  128105 aaa 128103  T

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Target: scaffold0795 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 300 - 404
Alignment:
Q  270 aaactgaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgagtttggttcaggcaggtatccgcatgtatgtgttttgttgtcatgc 369  Q
    ||||||| || ||||| ||||| |||||||| ||||||||||||| | ||||||||||||||| ||| ||||  | |   |||| |||||||||||||||    
T  300 aaactgatacccatacccaaactcagtcaaaacggagaaaacccg-tcaattgagtttggttctggcgggtaatcacggatatgggttttgttgtcatgc 398  T
Q  370 ctaatt 375  Q
    ||||||    
T  399 ctaatt 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 4661 - 4552
Alignment:
Q  203 ggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaactgaaactcatactcaaacacagtcaaagc 302  Q
    |||||||||| | ||||||||  |||||| |||||| | ||||  |||| |||||||||||| || ||||   |||||||||||||||| |||| ||| |    
T  4661 ggtatgggttcgtggtgggtagctatatccctgttacctgtcccatacccgtattttgaaattggggaaaaccaaactcatactcaaactcagttaaaac 4562  T
Q  303 ggagaaaacc 312  Q
    ||| ||||||    
T  4561 ggataaaacc 4552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 33397 - 33470
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaatcggagaaa 272  Q
    |||||||||||||| |||||||||||||||||  | |||| ||||||  |||| || |||||||||||| ||||    
T  33397 tttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaa 33470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 55981 - 55917
Alignment:
Q  199 tttgggtatgggtttggggtgggtacatatatctctgttatccgtcctgtacctgtattttgaaat 264  Q
    ||||||||||| || |||||||||||||||||| |||||| || |||||||||  |||||||||||    
T  55981 tttgggtatggattcggggtgggtacatatatccctgtta-ccctcctgtacccatattttgaaat 55917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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