View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_42 (Length: 280)
Name: NF8577_low_42
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 18232571 - 18232332
Alignment:
| Q |
27 |
agaatcaacctttgagtttgttgagtcctatcaccgacaaaaaattatcaaaccctcttagcagtaacaacacttctctgatgatatggaacatgttgga |
126 |
Q |
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| T |
18232571 |
agaatcaatctttgagtttgttgagtcctatcaccgacaaaatattatcaaaccctcttagcagtaacaacacttctctgatgatatggaatatgttgga |
18232472 |
T |
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| Q |
127 |
ttatagggtcattgagctatgcaaatcatataaaattgaaaagattacaggtttttcaaatcctgtgaagaaagttgtgttctatcctaactctccttgg |
226 |
Q |
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| T |
18232471 |
ttatagggtcattgagctatgcaaatcatataaaattgaaaagattacaggtttttcaaatcctgtgaagaaagttgtgttctatcctaactctccttgg |
18232372 |
T |
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| Q |
227 |
agtagtgttgaggattgtgtttcttgttgtatctttcaag |
266 |
Q |
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| T |
18232371 |
agtagtgttgaggattgtgtttcttgttgtatctttcaag |
18232332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 31553577 - 31553338
Alignment:
| Q |
27 |
agaatcaacctttgagtttgttgagtcctatcaccgacaaaaaattatcaaaccctcttagcagtaacaacacttctctgatgatatggaacatgttgga |
126 |
Q |
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| T |
31553577 |
agaatcaacctgtgagtttgttgagtcctatctctgaccgaaaactatcataccctcttagcaataacaacacttctcccatgctatggaacttgttgga |
31553478 |
T |
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| Q |
127 |
ttatagggtcattgagctatgcaaatcatataaaattgaaaagattacaggtttttcaaatcctgtgaagaaagttgtgttctatcctaactctccttgg |
226 |
Q |
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| T |
31553477 |
ttatagggtcattgagctatgcaaatcatataaaattgaaaaaactacacctttctctagttctgcgatcaaagttgcgttctatcctaactctccttgg |
31553378 |
T |
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| Q |
227 |
agtagtgttgaggattgtgtttcttgttgtatctttcaag |
266 |
Q |
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| T |
31553377 |
actagtgttgaggattgtgtagcttgttgtatctttcaag |
31553338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 266
Target Start/End: Complemental strand, 31563952 - 31563726
Alignment:
| Q |
40 |
gagtttgttgagtcctatcaccgacaaaaaattatcaaaccctcttagcagtaacaacacttctctgatgatatggaacatgttggattatagggtcatt |
139 |
Q |
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| T |
31563952 |
gagtttgttgagtcctatctccgactgcaaattatcatatcctcttgacagtaacaacagttctccaattatatggaacttgttgaattatagggtcatt |
31563853 |
T |
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| Q |
140 |
gagctatgcaaatcatataaaattgaaaagattacaggtttttcaaatcctgtgaagaaagttgtgttctatcctaactctccttggagtagtgttgagg |
239 |
Q |
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| T |
31563852 |
gagctatgcaagtcatatacatttcaaaagacactatactcaccaagttatgtgagcaaagttgtgttctatcctaactctcctcggattaatgttgggg |
31563753 |
T |
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| Q |
240 |
attgtgtttcttgttgtatctttcaag |
266 |
Q |
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| T |
31563752 |
attgtgtagcctgttgtatctttcaag |
31563726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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