View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_43 (Length: 276)

Name: NF8577_low_43
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_43
NF8577_low_43
[»] chr2 (2 HSPs)
chr2 (35-260)||(7823594-7823819)
chr2 (163-196)||(13015384-13015417)
[»] chr1 (9 HSPs)
chr1 (157-260)||(8221270-8221373)
chr1 (156-260)||(5697473-5697577)
chr1 (157-260)||(25134845-25134948)
chr1 (207-260)||(28869046-28869099)
chr1 (206-260)||(29586204-29586258)
chr1 (206-260)||(30721658-30721712)
chr1 (206-260)||(34318452-34318506)
chr1 (207-260)||(322912-322965)
chr1 (157-194)||(13420449-13420486)
[»] chr4 (16 HSPs)
chr4 (156-260)||(25235134-25235238)
chr4 (206-260)||(52708049-52708103)
chr4 (167-260)||(4391759-4391852)
chr4 (206-260)||(41864131-41864185)
chr4 (211-260)||(50502284-50502333)
chr4 (156-260)||(4465522-4465626)
chr4 (206-260)||(20511448-20511502)
chr4 (156-260)||(48056657-48056758)
chr4 (206-260)||(11050356-11050410)
chr4 (206-260)||(33005179-33005233)
chr4 (206-260)||(35190667-35190721)
chr4 (206-260)||(55856578-55856632)
chr4 (207-260)||(29413571-29413624)
chr4 (211-260)||(32101786-32101835)
chr4 (207-260)||(37047069-37047122)
chr4 (209-249)||(30562910-30562950)
[»] chr3 (12 HSPs)
chr3 (167-260)||(29203082-29203175)
chr3 (134-260)||(45368581-45368707)
chr3 (156-260)||(20450451-20450555)
chr3 (156-260)||(41518354-41518458)
chr3 (207-260)||(7041105-7041158)
chr3 (206-260)||(37713195-37713250)
chr3 (206-260)||(193440-193494)
chr3 (206-260)||(19948373-19948427)
chr3 (206-260)||(39719397-39719450)
chr3 (207-260)||(44545274-44545327)
chr3 (207-260)||(48378270-48378323)
chr3 (207-260)||(48943033-48943086)
[»] chr5 (6 HSPs)
chr5 (206-260)||(13936234-13936288)
chr5 (206-260)||(11100803-11100857)
chr5 (206-260)||(6893420-6893474)
chr5 (206-260)||(13228514-13228568)
chr5 (206-260)||(29392148-29392202)
chr5 (207-260)||(39275466-39275519)
[»] scaffold0002 (1 HSPs)
scaffold0002 (167-260)||(119289-119382)
[»] chr7 (8 HSPs)
chr7 (159-260)||(22642309-22642410)
chr7 (206-260)||(791391-791445)
chr7 (206-260)||(1342819-1342873)
chr7 (206-260)||(46757753-46757807)
chr7 (206-260)||(46879582-46879636)
chr7 (207-260)||(9487451-9487504)
chr7 (206-251)||(21740212-21740257)
chr7 (207-260)||(44596654-44596707)
[»] chr6 (1 HSPs)
chr6 (209-260)||(15591201-15591252)
[»] chr8 (8 HSPs)
chr8 (206-260)||(7378890-7378944)
chr8 (206-260)||(29189776-29189830)
chr8 (206-260)||(8436574-8436628)
chr8 (157-246)||(44263016-44263105)
chr8 (206-260)||(6338360-6338414)
chr8 (206-260)||(8270948-8271002)
chr8 (206-260)||(22877975-22878029)
chr8 (206-260)||(43849257-43849311)
[»] scaffold0598 (1 HSPs)
scaffold0598 (157-190)||(9082-9115)
[»] scaffold0246 (1 HSPs)
scaffold0246 (207-260)||(7100-7153)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 7823819 - 7823594
Alignment:
Q  35 gagaatgttttagaccattttaaagatctcttcgatttacaagctagtcttccctacccaatattcttgaagctctttgttaggtccatgtaaatttgac 134  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | |    
T  7823819 gagaatgttttaaaccattttaaagatctcttcgatttacaagctagtctttcctacccaatattcttgaaactctttgttaggtccatgtaaattagtc 7823720  T
Q  135 tgtttggtaacaccnnnnnnngagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacga 234  Q
    ||||||||||||||       ||||||| || |||||||||||||||||||| || ||||||          |||| ||| ||| || ||||||||||||    
T  7823719 tgtttggtaacacctaaaaaagagcttagagcttatagcggatagcttataaactcgtctgacaaaaaaaattctgcttgataatggctttttacaacga 7823620  T
Q  235 acctatagcttatttcacgagcttat 260  Q
     | | |||||||||||||||||||||    
T  7823619 gcttgtagcttatttcacgagcttat 7823594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 13015384 - 13015417
Alignment:
Q  163 tagtttatagcggatagcttataagcttgtctga 196  Q
    ||||||||||||||||||||||||||| ||||||    
T  13015384 tagtttatagcggatagcttataagctcgtctga 13015417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 8221373 - 8221270
Alignment:
Q  157 agcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagc 256  Q
    ||||||||| ||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  8221373 agcttatagcttatagcggatagcttataagctcgtctgacaaaaaaagctctgtttggtaacggttttttacaacgagcttatagcttatttcacgagc 8221274  T
Q  257 ttat 260  Q
    ||||    
T  8221273 ttat 8221270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 5697473 - 5697577
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    |||||||||||||||||||||||||||||||| | ||||||         |||| ||||||||| ||||||||||| || | ||||||||||||||||||    
T  5697473 gagcttatagtttatagcggatagcttataagttcgtctgacaaaaaaaactctatttggtaacagttttttacaatgagcttatagcttatttcacgag 5697572  T
Q  256 cttat 260  Q
    |||||    
T  5697573 cttat 5697577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 25134845 - 25134948
Alignment:
Q  157 agcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagc 256  Q
    |||||||| ||||||||  |||||||||||||| ||||||          ||||||||||||| |||||||||||||| | |||||||||||||||||||    
T  25134845 agcttataatttatagctaatagcttataagctcgtctgacaaaaaaagttctgtttggtaacagttttttacaacgagcttatagcttatttcacgagc 25134944  T
Q  257 ttat 260  Q
    ||||    
T  25134945 ttat 25134948  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 28869099 - 28869046
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||| |||||||||||||||   ||||| |||||||||||||||||    
T  28869099 tctgtttggtaaaggttttttacaacgagtttatagtttatttcacgagcttat 28869046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 29586204 - 29586258
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  29586204 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 29586258  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 30721712 - 30721658
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  ||||| || | |||| |||||||||||||||||||||||    
T  30721712 ctctgtttggtaacactttttcaccatgaacttatagcttatttcacgagcttat 30721658  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 34318452 - 34318506
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||| ||||||| || |||| | |||||||||||| ||||||||||    
T  34318452 ctctgtttggtaatggtttttcaccacgagcttatagcttattttacgagcttat 34318506  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 322912 - 322965
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  322912 tctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 322965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 13420449 - 13420486
Alignment:
Q  157 agcttatagtttatagcggatagcttataagcttgtct 194  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  13420449 agcttatagcttatagcggatagcttataagctcgtct 13420486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 25235134 - 25235238
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    |||||||||||||||||| ||||||||||||| | ||||||         ||||||||||||||| ||||||||||||| | |||||||||||||| |||    
T  25235134 gagcttatagtttatagctgatagcttataagttcgtctgacaaaaaaagctctgtttggtaacgcttttttacaacgagcttatagcttatttcaggag 25235233  T
Q  256 cttat 260  Q
    |||||    
T  25235234 cttat 25235238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 52708103 - 52708049
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  52708103 ctctgtttggtaacgattttttacaacgagcttatagcttatttcacgagcttat 52708049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 4391852 - 4391759
Alignment:
Q  167 ttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||| ||||||||||||||| ||||||         ||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  4391852 ttatagctgatagcttataagctcgtctgacaaaaaaagctctgtttggtaacgcttttttacaacgagcttatagcttatttcaggagcttat 4391759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 41864185 - 41864131
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||    
T  41864185 ctctgtttgataacggttttttacaacggacctatagcttattttacgaacttat 41864131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 50502284 - 50502333
Alignment:
Q  211 tttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||    
T  50502284 tttggtaacggttttttacaacgagtttatagcttatttcacgagcttat 50502333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 4465626 - 4465522
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    |||||||||| |||||| |||||||||||||| ||||||||          | ||||||||||||  ||||||||| || | ||||||||||||||||||    
T  4465626 gagcttatagcttatagtggatagcttataagtttgtctgacaaaaaaagttatgtttggtaacgtctttttacaatgagcttatagcttatttcacgag 4465527  T
Q  256 cttat 260  Q
    |||||    
T  4465526 cttat 4465522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 20511448 - 20511502
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| |||| |||||||||||||| | |||||||||||||| ||||||||    
T  20511448 ctctgtttgataacagttttttacaacgagcttatagcttatttcatgagcttat 20511502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 48056758 - 48056657
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    ||||||||||||||||||||||||||||||||   ||||||           ||||||||||||  ||||||||||||||| ||||| |||||||||||     
T  48056758 gagcttatagtttatagcggatagcttataagtacgtctgacaaaaaaa---ctgtttggtaacaattttttacaacgaacttatagtttatttcacgaa 48056662  T
Q  256 cttat 260  Q
    |||||    
T  48056661 cttat 48056657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 11050356 - 11050410
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||| | ||||| || | |||| |||||||||||||||||||||||    
T  11050356 ctctgtttggtaatgctttttcaccatgaacttatagcttatttcacgagcttat 11050410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 33005233 - 33005179
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  33005233 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 33005179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 35190721 - 35190667
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||| |||||||||||||   | |||||||||||| ||||||||    
T  35190721 ctctgtttggtaacgcttttttacaacgagtttgtagcttatttcaggagcttat 35190667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 55856632 - 55856578
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  55856632 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 55856578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 29413571 - 29413624
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  ||||| || | |||| |||||||||||||||||||||||    
T  29413571 tctgtttggtaacactttttcaccatgaacttatagcttatttcacgagcttat 29413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 32101835 - 32101786
Alignment:
Q  211 tttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||| |||||| |||| | |||| ||||||||||||||||||    
T  32101835 tttggtaacggtcttttaccacgagcttataacttatttcacgagcttat 32101786  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 37047069 - 37047122
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||| ||||| ||||||||||||| | |||||||||||| | ||||||||    
T  37047069 tctgtttgataacgcttttttacaacgagcttatagcttattttaggagcttat 37047122  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 30562950 - 30562910
Alignment:
Q  209 tgtttggtaacggttttttacaacgaacctatagcttattt 249  Q
    |||||||||||| ||||||||||||||| |||| |||||||    
T  30562950 tgtttggtaacgattttttacaacgaacttataacttattt 30562910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 29203175 - 29203082
Alignment:
Q  167 ttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||||||||| | ||||||         ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||    
T  29203175 ttatagcggatagcttataagttcgtctgacaaaaaaaactctgtttggtaacggttttttacaacgagcttatagtttatttcacgagcttat 29203082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 45368581 - 45368707
Alignment:
Q  134 ctgtttggtaacaccnnnnnnngagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacg 233  Q
    |||||||||||||||       |||||||||| ||||||| ||||||||||||||| ||||||         ||||||||||||||| |||||||||||     
T  45368581 ctgtttggtaacacccaaaaaggagcttatagcttatagctgatagcttataagctcgtctgacaaaaaaagctctgtttggtaacgcttttttacaaca 45368680  T
Q  234 aacctatagcttatttcacgagcttat 260  Q
    | | |||||||||||||| ||||||||    
T  45368681 agcttatagcttatttcaggagcttat 45368707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 20450451 - 20450555
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    |||||||||| ||||||||||||||||||||||| ||||||         |||||||||||||| |||||||||||| |   |||| |||||||||||||    
T  20450451 gagcttatagcttatagcggatagcttataagctcgtctgacaaaaaaagctctgtttggtaacagttttttacaacaagtttataacttatttcacgag 20450550  T
Q  256 cttat 260  Q
    |||||    
T  20450551 cttat 20450555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 41518354 - 41518458
Alignment:
Q  156 gagcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgag 255  Q
    |||||||||||||||||| ||||||||||||||| ||||||         || | |||||||||| |||||||||| || | |||||||||||||| |||    
T  41518354 gagcttatagtttatagctgatagcttataagctcgtctgataaaaaaagctttctttggtaacgcttttttacaatgagcttatagcttatttcaagag 41518453  T
Q  256 cttat 260  Q
    |||||    
T  41518454 cttat 41518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7041105 - 7041158
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  7041105 tctgtttggtaacgcttttttacaacgagcttatagcttatttcaggagcttat 7041158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 37713250 - 37713195
Alignment:
Q  206 ctctgtttg-gtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| |||||||||||||||||||| | ||||| |||||| ||||||||||    
T  37713250 ctctgtttgagtaacggttttttacaacgagcttatagtttattttacgagcttat 37713195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 193440 - 193494
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  ||||||||||||| | |||||||||||| | ||||||||    
T  193440 ctctgtttggtaacaattttttacaacgagcttatagcttattttatgagcttat 193494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 19948427 - 19948373
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  19948427 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 19948373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 39719397 - 39719450
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||    
T  39719397 ctctgtttgataacg-ttttttacaacaagcttatagcttatttcacgagcttat 39719450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 44545274 - 44545327
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  ||||| || | |||| |||||||||||||||||||||||    
T  44545274 tctgtttggtaacactttttcaccatgaacttatagcttatttcacgagcttat 44545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 48378270 - 48378323
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  ||||| || ||||  ||||||||||||||||||||||||    
T  48378270 tctgtttggtaacattttttcaccacgagtctatagcttatttcacgagcttat 48378323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 48943033 - 48943086
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  48943033 tctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 48943086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 13936234 - 13936288
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  13936234 ctctgtttggtaacggttttttacaacgagcttatagcttatttcatgagcttat 13936288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 11100857 - 11100803
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11100857 ctctgtttggtaacgtctttttacaacgagcttatagcttatttcacgagcttat 11100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 6893474 - 6893420
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  6893474 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 6893420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 13228568 - 13228514
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  13228568 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 13228514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 29392202 - 29392148
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  29392202 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 29392148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 39275466 - 39275519
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  39275466 tctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 39275519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 119382 - 119289
Alignment:
Q  167 ttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||||||||||||||||| |         || ||||| ||||| |||||||||||||| | |||||||||||||||||||||||    
T  119382 ttatagcggatagcttataagcttgtctaacaaaaaaagctttgtttagtaacagttttttacaacgagcttatagcttatttcacgagcttat 119289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 260
Target Start/End: Complemental strand, 22642410 - 22642309
Alignment:
Q  159 cttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagctt 258  Q
    |||||||||||||||||||| |||||||| ||||||||          |||||||||||||||||||| || |||| | |||||||||||||||||| ||    
T  22642410 cttatagtttatagcggataacttataagtttgtctgacaaaataaattctgtttggtaacggtttttcaccacgagcttatagcttatttcacgagttt 22642311  T
Q  259 at 260  Q
    ||    
T  22642310 at 22642309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 791445 - 791391
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||| | ||||||||    
T  791445 ctctgtttgataacgattttttacaacgaacttatagcttattttatgagcttat 791391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 1342819 - 1342873
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||||  |||||||    
T  1342819 ctctgtttggtaacgcttttttacaacgagcttatagcttatttcagaagcttat 1342873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 46757753 - 46757807
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||||| ||||||||    
T  46757753 ctctgtttggtaacgcttttttacaacgagcttataacttatttcatgagcttat 46757807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 46879636 - 46879582
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||| |||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  46879636 ctctgtctggtaacgcttttttacaacgagcttatagcttatttcaggagcttat 46879582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 9487451 - 9487504
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  9487451 tctgtttggtaacacttttttactatgagcttatagcttatttcacgagcttat 9487504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 21740257 - 21740212
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttca 251  Q
    ||||||||||||||| ||||||||||| | | ||||||||||||||    
T  21740257 ctctgtttggtaacgcttttttacaacaagcttatagcttatttca 21740212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 44596654 - 44596707
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  44596654 tctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 44596707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 15591252 - 15591201
Alignment:
Q  209 tgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  15591252 tgtttgataacggttttttacaacgagcttatagcttatttcacgagcttat 15591201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 7378890 - 7378944
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||    
T  7378890 ctctgtttggtaacgcttttttacaacgagcttatagcttatttcatgagcttat 7378944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 29189830 - 29189776
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||||||||||||    
T  29189830 ctctgtttagtaacggttttttactacgagcttatagcttatttcacgagcttat 29189776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 8436628 - 8436574
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||| | ||||||||    
T  8436628 ctctgtttgataacgattttttacaacgaacttatagcttattttatgagcttat 8436574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 44263016 - 44263105
Alignment:
Q  157 agcttatagtttatagcggatagcttataagcttgtctgagnnnnnnnnctctgtttggtaacggttttttacaacgaacctatagctta 246  Q
    ||||||||| ||||||| ||||| ||||||||| ||||||         ||||||||||||||| ||||||||||||| | |||||||||    
T  44263016 agcttatagcttatagctgatagtttataagctcgtctgacaaaaaaaactctgtttggtaacgcttttttacaacgagcttatagctta 44263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 6338360 - 6338414
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  6338360 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 6338414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 8270948 - 8271002
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  8270948 ctctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 8271002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 22878029 - 22877975
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  ||||| || | |||| |||||||||||||||||||||||    
T  22878029 ctctgtttggtaacactttttcaccatgaacttatagcttatttcacgagcttat 22877975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 43849311 - 43849257
Alignment:
Q  206 ctctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    ||||||||||||||  ||||||||||||| | |||||||||||| | ||||||||    
T  43849311 ctctgtttggtaacaattttttacaacgagcttatagcttattttatgagcttat 43849257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 9115 - 9082
Alignment:
Q  157 agcttatagtttatagcggatagcttataagctt 190  Q
    ||||||||| ||||||||||||||||||||||||    
T  9115 agcttatagcttatagcggatagcttataagctt 9082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7100 - 7153
Alignment:
Q  207 tctgtttggtaacggttttttacaacgaacctatagcttatttcacgagcttat 260  Q
    |||||||||||||  |||||||| | || | |||||||||||||||||||||||    
T  7100 tctgtttggtaacacttttttaccatgagcttatagcttatttcacgagcttat 7153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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