View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_45 (Length: 275)

Name: NF8577_low_45
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_45
NF8577_low_45
[»] chr2 (3 HSPs)
chr2 (25-261)||(26459936-26460175)
chr2 (25-256)||(26397535-26397766)
chr2 (25-241)||(25830092-25830308)
[»] chr4 (2 HSPs)
chr4 (25-261)||(20646278-20646514)
chr4 (25-246)||(56108289-56108510)
[»] chr1 (3 HSPs)
chr1 (108-261)||(845521-845674)
chr1 (33-246)||(30400132-30400346)
chr1 (33-246)||(30406689-30406903)
[»] scaffold0182 (1 HSPs)
scaffold0182 (25-261)||(29820-30056)
[»] scaffold0006 (1 HSPs)
scaffold0006 (25-256)||(276930-277161)
[»] chr6 (1 HSPs)
chr6 (25-246)||(26014056-26014277)
[»] chr7 (1 HSPs)
chr7 (25-246)||(6965560-6965782)
[»] chr3 (1 HSPs)
chr3 (25-261)||(33002261-33002496)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 26460175 - 26459936
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatca---aaatccatcgcataaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   |||||||||||||||||    
T  26460175 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaa 26460076  T
Q  122 gaatcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagattt 221  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26460075 gaatcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagattt 26459976  T
Q  222 ctaatatctttctcctagcaaccaactttctcataccctc 261  Q
     |||||||||||||| ||||||||||||||||||||||||    
T  26459975 ttaatatctttctccaagcaaccaactttctcataccctc 26459936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 26397535 - 26397766
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    |||||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| |  ||| |||||||||| ||||| |  |||||||||||    
T  26397535 tcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaa 26397634  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||||| ||||| || ||||||| || || || | | || |||||| ||||||||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  26397635 tcttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttcta 26397734  T
Q  225 atatctttctcctagcaaccaactttctcata 256  Q
    | |||||||||| |||||||||||||||||||    
T  26397735 acatctttctccaagcaaccaactttctcata 26397766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 25830092 - 25830308
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    ||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| |||||| | |  ||||| |||||||| ||||| || |||||||| ||    
T  25830092 tcacatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaaaaaa 25830191  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||| ||||||| || |||||||||| || |||| ||||||||||   |||| ||||| || ||||| | ||||||||||   ||||||||| ||||||||    
T  25830192 tctaggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatttcta 25830291  T
Q  225 atatctttctcctagca 241  Q
    || ||||||||| ||||    
T  25830292 atgtctttctccaagca 25830308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 20646278 - 20646514
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  20646278 tcacatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaa 20646377  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||||| ||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  20646378 tcttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttcta 20646477  T
Q  225 atatctttctcctagcaaccaactttctcataccctc 261  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  20646478 atatctttctccgagcaaccaactttctcatatcctc 20646514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 56108510 - 56108289
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    ||||||||||||||||||  || || ||| |||| |||||||||| |||||||||||||||||  ||| | |||||||| | ||| || |||||||||||    
T  56108510 tcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaa 56108411  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    || |||| ||| || |||||| ||| || |||| || |||||||||||||||||||| |||||||||| |||||| ||| | ||||||||| | |||||     
T  56108410 tcctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttctt 56108311  T
Q  225 atatctttctcctagcaaccaa 246  Q
    | |||||||||| |||||||||    
T  56108310 acatctttctccaagcaaccaa 56108289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 845521 - 845674
Alignment:
Q  108 tccatcgcataaaagaatcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatcct 207  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  845521 tccatcgcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatcct 845620  T
Q  208 tatctaaaagatttctaatatctttctcctagcaaccaactttctcataccctc 261  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  845621 tatctaaaagatttataatatctttttccgagcaaccaactttctcataccctc 845674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 30400346 - 30400132
Alignment:
Q  33 ccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaatcttggat 132  Q
    ||||||||||  || |||||| |||| ||| |||| |  |||||||||||| | |  ||||| |||||||| ||||| ||| || |||| |||||  |||    
T  30400346 ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat 30400247  T
Q  133 tttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattct--aaagtcaaacgacgatccttatctaaaagatttctaatatct 230  Q
    ||| || |||||||||| || |||| |||||||||||| |||| ||||| || |||  |||| |||| |||||   ||||||||| |||||||||| |||    
T  30400246 tttattcttgcataagcata-aacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct 30400148  T
Q  231 ttctcctagcaaccaa 246  Q
    |||||| |||||||||    
T  30400147 ttctccaagcaaccaa 30400132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 30406903 - 30406689
Alignment:
Q  33 ccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaatcttggat 132  Q
    ||||||||||  || |||||| |||| ||| |||| |  |||||||||||| | |  ||||| |||||||| ||||| ||| || |||| |||||  |||    
T  30406903 ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat 30406804  T
Q  133 tttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattct--aaagtcaaacgacgatccttatctaaaagatttctaatatct 230  Q
    ||| || |||||||||| || |||| |||||||||||| |||| ||||| || |||  |||| |||| |||||   ||||||||| |||||||||| |||    
T  30406803 tttattcttgcataagcata-aacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct 30406705  T
Q  231 ttctcctagcaaccaa 246  Q
    |||||| |||||||||    
T  30406704 ttctccaagcaaccaa 30406689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 29820 - 30056
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    |||||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| |   || |||||||||| ||||| |  |||||||||||    
T  29820 tcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacatgaccatcatcatccaaatcaaatgcataaaagaa 29919  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||  |||||||    
T  29920 tcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttatctaaataatttcta 30019  T
Q  225 atatctttctcctagcaaccaactttctcataccctc 261  Q
    | |||||||||| ||||||||||||||||||| ||||    
T  30020 acatctttctccaagcaaccaactttctcatatcctc 30056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 276930 - 277161
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    |||||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| |  ||| |||||||||| ||||| |  |||||||||||    
T  276930 tcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaa 277029  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||||| ||||| || ||||||| |  || || | | || |||||| ||||||||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  277030 tcttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttcta 277129  T
Q  225 atatctttctcctagcaaccaactttctcata 256  Q
    | |||||||||| |||||||||||||||||||    
T  277130 acatctttctccaagcaaccaactttctcata 277161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 26014277 - 26014056
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    ||||||||||||||||||  || || ||| |||| |||||||||| |||||||||||||||||  ||| | |||||||| | ||| || |||||||||||    
T  26014277 tcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaa 26014178  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    || |||| ||| || |||||| ||| || |||| ||||||||||||||||||||||| |||||||||| |||||| ||| | ||||||||| | |||||     
T  26014177 tcctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttctt 26014078  T
Q  225 atatctttctcctagcaaccaa 246  Q
    | |||||||||| |||||||||    
T  26014077 acatctttctccaagcaaccaa 26014056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 6965782 - 6965560
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatcc-atccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaaga 123  Q
    ||||||||||||||||||  || |  ||| |||| ||||||| | | |||||||||||||||||  ||| | |||||||| | ||| || ||||||||||    
T  6965782 tcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaaga 6965683  T
Q  124 atcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttct 223  Q
    ||| |||||||| || |||||| ||| || |||| |||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||| | |||||    
T  6965682 atcctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttct 6965583  T
Q  224 aatatctttctcctagcaaccaa 246  Q
     | |||||||||| |||||||||    
T  6965582 tacatctttctccaagcaaccaa 6965560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 33002496 - 33002261
Alignment:
Q  25 tcacatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagccgatcatcatcatcaaaatccatcgcataaaagaa 124  Q
    ||||||||||||| ||||  ||||||||| |||| |||||||||| ||||||||| ||| | |  ||||| |||||||| ||||| || |||||||| ||    
T  33002496 tcacatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaaa-aa 33002398  T
Q  125 tcttggattttgttattgcataagcgtacaacattccaacattgcatttgcatctcctgattctaaagtcaaacgacgatccttatctaaaagatttcta 224  Q
    ||| ||||||| || |||||||||| || |||| ||||||||||   |||||||||| || ||||| | ||||||||||   ||||||||| ||||||||    
T  33002397 tctaggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatttcta 33002298  T
Q  225 atatctttctcctagcaaccaactttctcataccctc 261  Q
    || ||||||||| |||| ||||  || ||||||||||    
T  33002297 atgtctttctccaagcatccaatgttttcataccctc 33002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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