View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_47 (Length: 272)

Name: NF8577_low_47
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_47
NF8577_low_47
[»] chr7 (3 HSPs)
chr7 (20-136)||(1288754-1288870)
chr7 (143-218)||(1288200-1288275)
chr7 (20-125)||(29477817-29477925)
[»] chr4 (3 HSPs)
chr4 (20-136)||(15020017-15020136)
chr4 (20-136)||(55081250-55081369)
chr4 (20-124)||(40684423-40684530)
[»] chr6 (3 HSPs)
chr6 (23-136)||(32814619-32814735)
chr6 (70-136)||(28969592-28969660)
chr6 (20-136)||(14042071-14042190)
[»] chr3 (2 HSPs)
chr3 (71-136)||(48435435-48435500)
chr3 (44-101)||(29067681-29067738)
[»] chr1 (6 HSPs)
chr1 (70-136)||(31064434-31064502)
chr1 (20-136)||(19309158-19309277)
chr1 (25-136)||(12906574-12906688)
chr1 (20-101)||(2493407-2493489)
chr1 (71-136)||(36725187-36725254)
chr1 (71-136)||(27761389-27761456)
[»] scaffold0555 (1 HSPs)
scaffold0555 (71-135)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (59-135)||(148757-148835)
[»] chr8 (1 HSPs)
chr8 (70-107)||(34517677-34517714)
[»] chr5 (2 HSPs)
chr5 (70-136)||(16747778-16747846)
chr5 (71-136)||(18265054-18265121)
[»] chr2 (1 HSPs)
chr2 (20-107)||(41558643-41558731)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 1288870 - 1288754
Alignment:
Q  20 ttaagaccattattaattctgaaggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaagggagaagaaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1288870 ttaagaccattattaattctgaaggacattatatctcgaagggactaagttcttaagaacactctttaaatacgacgggatataaaaagggagaagaaat 1288771  T
Q  120 gaatagtttgtcaacac 136  Q
    |||||||||||||||||    
T  1288770 gaatagtttgtcaacac 1288754  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 1288275 - 1288200
Alignment:
Q  143 cactaatattgtgtgtataatctacctgatatgggacatagtaatttttcaattcacacaaacacacttggtgttc 218  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1288275 cactaatattgtgtgtataatctaccggatatgggacataataatttttcaattcacacaaacacacttggtgttc 1288200  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 29477925 - 29477817
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaaga 116  Q
    ||||||||||| ||||||| ||||| | ||||||    |||||||||| |  |||||||||||||||||||| ||| |||||| ||||  ||||||||||    
T  29477925 ttaagaccattcttaattccgaagggatattataaactgaagggattatgaccttaagaacactctttaaatccgaagggacagaaaaggagggagaaga 29477826  T
Q  117 aatgaatag 125  Q
    || ||||||    
T  29477825 aaagaatag 29477817  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 15020136 - 15020017
Alignment:
Q  20 ttaagaccattattaattctgaa-ggacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaaga 116  Q
    ||||||||||  |||||| |||| |||||||||||||| |||||| || | ||||||||||| |||| |||| |||||||||| ||||  ||| ||||||    
T  15020136 ttaagaccatccttaattttgaatggacattatatctcaaagggactatggtcttaagaacattcttgaaatccgacgggacagaaaaagaggaagaaga 15020037  T
Q  117 aatgaatagtttgtcaacac 136  Q
    || |||||| ||||||||||    
T  15020036 aaagaatagcttgtcaacac 15020017  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 55081369 - 55081250
Alignment:
Q  20 ttaagaccattattaattctgaag-gacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaaga 116  Q
    ||||||||||| |||||||||||| ||| |||||   |||||||| || |  |||||||||||||||||||| ||| |||||| ||||  ||||||| ||    
T  55081369 ttaagaccattcttaattctgaagagacgttataaaccgaagggactatggccttaagaacactctttaaattcgaagggacagaaaaagagggagagga 55081270  T
Q  117 aatgaatagtttgtcaacac 136  Q
    || |||||| | ||||||||    
T  55081269 aaagaatagctcgtcaacac 55081250  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 40684530 - 40684423
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaaga 116  Q
    ||||||||||| |||||||| |||| ||||||||   |||| ||| || |  |||||||||||||||||||| ||| |||||| ||||  ||||||||||    
T  40684530 ttaagaccattcttaattctaaagggacattataaaccgaatggactatgaccttaagaacactctttaaatccgaagggacagaaaaacagggagaaga 40684431  T
Q  117 aatgaata 124  Q
    || |||||    
T  40684430 aaagaata 40684423  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 32814735 - 32814619
Alignment:
Q  23 agaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaat 119  Q
    |||| ||| ||||||||||||| | ||||| ||| ||||||| || | |||||||||||||||||||||  ||||||||||||||  ||||||| ||||     
T  32814735 agactattcttaattctgaagggaaattatttcttgaagggactatggtcttaagaacactctttaaatttgacgggacataaaaagagggagaggaaaa 32814636  T
Q  120 gaatagtttgtcaacac 136  Q
    |||||| | ||||||||    
T  32814635 gaatagctcgtcaacac 32814619  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 28969660 - 28969592
Alignment:
Q  70 tcttaagaacactctttaaatacgacgggacat--aaaaagggagaagaaatgaatagtttgtcaacac 136  Q
    |||||||||||||||| |||| |||||||||||  ||| |||||||||||| |||||| | ||||||||    
T  28969660 tcttaagaacactcttaaaatccgacgggacatgaaaagagggagaagaaaagaatagctcgtcaacac 28969592  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 14042071 - 14042190
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaag--ggagaaga 116  Q
    ||||||||||| ||||||  ||||| ||||||||   |||||||| || |  ||| ||||||| |||||||| ||| |||||| ||||||  ||||||||    
T  14042071 ttaagaccattcttaatttcgaagggacattataaaccgaagggactatggcctttagaacacactttaaatccgaagggacagaaaaagagggagaaga 14042170  T
Q  117 aatgaatagtttgtcaacac 136  Q
    || |||||| | ||||||||    
T  14042171 aaagaatagctcgtcaacac 14042190  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 48435500 - 48435435
Alignment:
Q  71 cttaagaacactctttaaatacgacgggacataaaaagggagaagaaatgaatagtttgtcaacac 136  Q
    ||||||||||||||||||||  || ||||||||||||| |||| |||| |||||| ||||||||||    
T  48435500 cttaagaacactctttaaatctgaagggacataaaaagagagaggaaaagaatagcttgtcaacac 48435435  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 29067738 - 29067681
Alignment:
Q  44 gacattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggaca 101  Q
    ||||||||| ||||||| || || | |||||| |||||||||||||| ||||||||||    
T  29067738 gacattataactcgaagtgactatgatcttaaaaacactctttaaattcgacgggaca 29067681  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 31064434 - 31064502
Alignment:
Q  70 tcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 136  Q
    ||||||||||||||||||||| ||| |||||||||||  |||||||| ||| |||||||| ||||||||    
T  31064434 tcttaagaacactctttaaatccgaagggacataaaaagagggagaataaaagaatagttcgtcaacac 31064502  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 19309277 - 19309158
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaaga 116  Q
    ||||||||||||||||||| ||||| ||||||||   ||||| || || |  |||||||||||||||||||| ||| ||| || ||||  ||||||||||    
T  19309277 ttaagaccattattaattccgaagggacattataaaccgaagagactatgaccttaagaacactctttaaatccgaagggtcagaaaaagagggagaaga 19309178  T
Q  117 aatgaatagtttgtcaacac 136  Q
    || |||||| | ||||||||    
T  19309177 aaagaatagctcgtcaacac 19309158  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 12906574 - 12906688
Alignment:
Q  25 accattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatga 121  Q
    |||||| ||||||| ||||| ||||||||   |||||||| || |  |||||||||||||||||||| ||| |||||| ||||  |||||||||||| ||    
T  12906574 accattcttaattccgaagggacattataaaccgaagggactatggccttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaaga 12906673  T
Q  122 atagtttgtcaacac 136  Q
    |||| | ||||||||    
T  12906674 atagctcgtcaacac 12906688  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 2493489 - 2493407
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggaca 101  Q
    ||||||||||| ||||||| ||||| ||||||| ||||||||||| || | |||||| |||| ||||||||| | ||||||||    
T  2493489 ttaagaccattcttaattccgaagggacattatttctcgaagggactatggtcttaaaaacattctttaaatcctacgggaca 2493407  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 36725187 - 36725254
Alignment:
Q  71 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 136  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | ||||||||    
T  36725187 cttaagaacactctttaaatccgaagggacagaaaaagagggagaagaaaagaatagctcgtcaacac 36725254  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 27761456 - 27761389
Alignment:
Q  71 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 136  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  27761456 cttaagaacactctttaaattcgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 27761389  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 4756 - 4822
Alignment:
Q  71 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaaca 135  Q
    |||||||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| | |||||||    
T  4756 cttaagaacactctttaaatccgaagggacaaaaaaagagggagaagaaaagaatagctcgtcaaca 4822  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 148835 - 148757
Alignment:
Q  59 agggattaagttcttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaaca 135  Q
    |||||||| | |||||||||||||||| || | |||||||||| ||||  ||| ||| |||| ||||||||||||||||    
T  148835 agggattatggtcttaagaacactcttaaagtccgacgggacagaaaaagaggtagaggaaaagaatagtttgtcaaca 148757  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 34517677 - 34517714
Alignment:
Q  70 tcttaagaacactctttaaatacgacgggacataaaaa 107  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  34517677 tcttaaaaacactctttaaatccgacgggacataaaaa 34517714  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 16747846 - 16747778
Alignment:
Q  70 tcttaagaacactctttaaatacgacgggacataaaaa--gggagaagaaatgaatagtttgtcaacac 136  Q
    ||||||||||| | ||||||| ||| || |||||||||  |||||||||||||||||| | ||||||||    
T  16747846 tcttaagaacattttttaaatccgatggaacataaaaaaagggagaagaaatgaatagctcgtcaacac 16747778  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 18265121 - 18265054
Alignment:
Q  71 cttaagaacactctttaaatacgacgggacataaaa--agggagaagaaatgaatagtttgtcaacac 136  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||| |||| |||||| | ||||||||    
T  18265121 cttaagaacactctttaaatccgaagggacagaaaaagagggagaggaaaagaatagctcgtcaacac 18265054  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 41558731 - 41558643
Alignment:
Q  20 ttaagaccattattaattctgaagg-acattatatctcgaagggattaagttcttaagaacactctttaaatacgacgggacataaaaa 107  Q
    |||||| |||| |||||| |||||| || |||| |||| |||||| || | || || ||||||||||||||| |||||||||| |||||    
T  41558731 ttaagaacatttttaattttgaagggacgttatttctcaaagggactatggtcatatgaacactctttaaatccgacgggacaaaaaaa 41558643  T

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