View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_48 (Length: 267)
Name: NF8577_low_48
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 48422289 - 48422037
Alignment:
| Q |
1 |
attatcaaaatactatcaagagtcttatttatcttttccttcttttttatcctttcttaatgatttcaacgaagtatcaaaattggatgctattttatta |
100 |
Q |
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| T |
48422289 |
attatcaaaatactatcaagagtcttatttatcttttccttcttttttatcctttcttaatgatttcaacgaagtatcaaaattggatgctattttatta |
48422190 |
T |
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| Q |
101 |
acttgctaattaccagaatcagtcatttgcacgtcattcatttttgacatgttgcaacctactacgatgagcccgtgatgactctagagagtccactcat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48422189 |
acttgctaattaccagaatcagtcatttgcacttcattcatttttgacatgttgcaacctactacgatgagcccgtgatgactctagagagtccacccat |
48422090 |
T |
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| Q |
201 |
atctgcaaatccacttaaatttgatgcacactcttatgaggttgggatgttag |
253 |
Q |
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| T |
48422089 |
atctgcaaatccacttaaatttgatgcacactcttatgaggttgggatgttag |
48422037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 48416865 - 48416785
Alignment:
| Q |
173 |
ccgtgatgactctagagagtccactcatatctgcaaatccacttaaatttgatgcacactcttatgaggttgggatgttag |
253 |
Q |
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| T |
48416865 |
ccgtgatgactctagaaagcccactcatatctgcaattccacttaaatttgatgcacactcttatgaggttgggatgttag |
48416785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 51457810 - 51457701
Alignment:
| Q |
63 |
atttcaacgaagtatcaaaattggatgctattttattaacttgctaattaccagaatcagtcatttgcacgtcattcatttttgacatgttgcaacctac |
162 |
Q |
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| T |
51457810 |
atttcaataaagtatcaaaattggatgctattttatgaacttagcaattaccagaatcagtcatttgcacttcattcatttttgacatgtagcaacctcc |
51457711 |
T |
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| Q |
163 |
tacgatgagc |
172 |
Q |
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|||||||||| |
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| T |
51457710 |
tacgatgagc |
51457701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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