View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_5 (Length: 594)
Name: NF8577_low_5
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 20 - 582
Target Start/End: Complemental strand, 54931217 - 54930655
Alignment:
| Q |
20 |
gtaactggccctcttcttgggcctcatgcccaacaacttgagcctcgggctttttcttctgtttcttcgctggtggtgcaccaaaaacaacagacggtga |
119 |
Q |
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| T |
54931217 |
gtaactggccctcttcttgggcctcatgcccaacaacttgagcctcgggctttttcttctgtttcttcgctggtggtgcaccaaaaacaacagacggcga |
54931118 |
T |
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| Q |
120 |
cggaaaaaacgggcgctgagcccaaacgcgagggttgggttttctattcttcacggttctggtcttggtggtaattttcattttttcagttgaaaaacgt |
219 |
Q |
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| T |
54931117 |
cggaaaaaacgggcgctgagcccaaacgcgagggttgggttttctattcttcacggttctggtcttggtggtaattttcattttttcagttgaaaaacgt |
54931018 |
T |
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| Q |
220 |
aaagtttttccatgctgagtttcatgttgtttaggacacgcgttggtttgaatttgaaccgggtagagaagagatagttctgggagagaatcatctacga |
319 |
Q |
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| T |
54931017 |
aaagtttttccatgctgagtttcatgttgtttaggacacgcgttggtttgaatttgaaccgggtagagaagagatagttctgggagagaatcatctacga |
54930918 |
T |
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| Q |
320 |
agtgtgaaacccattccaggcctgccacgtcatcatcctgtaaattgaaaccttattttcagctccaacttctcaatttcaattactacaaaacggataa |
419 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54930917 |
aatgtgaaacccattccaggcctgccacgtcatcatcctgtaaattgaaaccttattttcagctccaacttctcaatttcaattactacaaaacggataa |
54930818 |
T |
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| Q |
420 |
aaactagaagggaaacgaacgaagaaagagaaactcacgggaacgagtaattcggttgagaaaatggaagaatcaaaggaagcgtcggtggaatttgagt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54930817 |
aaactagaagggaaacgaacgaagaaagagaaactcacgggaacgagtaattcggttgagaaaatggaagaatcaaaggaagcgccggtggaatttgagt |
54930718 |
T |
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| Q |
520 |
tgttatcttctgagagtgattgagaggaaagagataaactactatctttctcttgttcatctc |
582 |
Q |
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| T |
54930717 |
tgttatcttctgagagtgattgagaagaaggagataaactactctctttctcttgttcatctc |
54930655 |
T |
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