View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_52 (Length: 250)
Name: NF8577_low_52
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_52 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 36946329 - 36946483
Alignment:
| Q |
97 |
aagtttggctggtttg-ttgatgttgacttctgatgtcattctacatgcaggaatttcattcagctgatactttccggtgataatagtggaagggttttg |
195 |
Q |
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| T |
36946329 |
aagtttggctggttttattggtgctgacttctgatgtcattctacatgcaggaatttcattcagctgatactttctggtgacaatagtgggagggttttg |
36946428 |
T |
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| Q |
196 |
aaatacaattctgccaccaaggaaaccactgttcttgtgagaaacgttcaatttc |
250 |
Q |
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| T |
36946429 |
aaatacaattctgccaccaaggaaaccaccgttcttgttagaaacattcaatttc |
36946483 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 17768394 - 17768290
Alignment:
| Q |
144 |
caggaatttcattcagctgatactttccggtgataatagtggaagggttttgaaatacaattctgccaccaaggaaaccactgttcttgtgagaaacgtt |
243 |
Q |
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|||||||||||| |||||| || ||||||| ||| ||||||||| ||||||||||||||| |||| || ||||||||||||||||| ||||| || ||| |
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| T |
17768394 |
caggaatttcatgcagctggtattttccggggatgatagtggaaaggttttgaaatacaaccctgcaacaaaggaaaccactgttctagtgaggaatgtt |
17768295 |
T |
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| Q |
244 |
caatt |
248 |
Q |
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| T |
17768294 |
caatt |
17768290 |
T |
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