View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_54 (Length: 249)
Name: NF8577_low_54
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 51741077 - 51740860
Alignment:
| Q |
19 |
accttagacatccctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttcta |
118 |
Q |
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| T |
51741077 |
accttagacatccctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttcta |
51740978 |
T |
|
| Q |
119 |
atttaccatcaattcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaa |
218 |
Q |
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| T |
51740977 |
atttaccatcaattcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaa |
51740878 |
T |
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| Q |
219 |
agatgatactgcccttct |
236 |
Q |
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|||||||||||||||||| |
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| T |
51740877 |
agatgatactgcccttct |
51740860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 10201863 - 10201660
Alignment:
| Q |
31 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
130 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||| | |
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| T |
10201863 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
10201764 |
T |
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| Q |
131 |
ttcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactgc |
230 |
Q |
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| T |
10201763 |
ttcgttgatgcttgtgaaagggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactgt |
10201664 |
T |
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| Q |
231 |
cctt |
234 |
Q |
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|||| |
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| T |
10201663 |
cctt |
10201660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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