View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_55 (Length: 248)

Name: NF8577_low_55
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_55
NF8577_low_55
[»] chr8 (4 HSPs)
chr8 (5-231)||(14004103-14004329)
chr8 (5-231)||(5766475-5766701)
chr8 (45-146)||(17635611-17635712)
chr8 (45-146)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (86-190)||(1481684-1481785)
chr4 (19-143)||(8186317-8186441)
chr4 (42-134)||(661855-661947)
chr4 (42-142)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (63-146)||(7132323-7132406)
chr6 (63-146)||(7135246-7135329)
chr6 (63-146)||(7138169-7138252)
chr6 (42-146)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (42-142)||(1036570-1036670)
[»] chr1 (1 HSPs)
chr1 (43-127)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 14004103 - 14004329
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14004103 caatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 14004202  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004203 aggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 14004302  T
Q  205 gagaggtcgagggaggtgagtttggtg 231  Q
    |||||||||||||||||||||||||||    
T  14004303 gagaggtcgagggaggtgagtttggtg 14004329  T

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Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 5766701 - 5766475
Alignment:
Q  5 caatgagatggacatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagc 104  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5766701 caatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagc 5766602  T
Q  105 aggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatcgaggtcaccataatagtac 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  5766601 aggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatctaggtcaccgtaatagtac 5766502  T
Q  205 gagaggtcgagggaggtgagtttggtg 231  Q
    |||||||||||||||||||||||||||    
T  5766501 gagaggtcgagggaggtgagtttggtg 5766475  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  145 tt 146  Q
    ||    
T  17635612 tt 17635611  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  45 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 144  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  145 tt 146  Q
    ||    
T  17642891 tt 17642890  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 1481684 - 1481785
Alignment:
Q  86 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc 185  Q
    |||||||||| |||||||| |||||| |||||||||| || | ||||||||||||||||||   || |||||| |  |||||||| || ||||| |||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagttt---caatgggaaacaggagatttgggtgagaagcgcatc 1481780  T
Q  186 gaggt 190  Q
    |||||    
T  1481781 gaggt 1481785  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8186441 - 8186317
Alignment:
Q  19 tcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagtt 118  Q
    ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||| || || |||| | ||||||| ||||| ||||||| | || |||    
T  8186441 tcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt 8186342  T
Q  119 ggttggaaagattgagcgatgtgag 143  Q
     ||| || |||||||| ||||||||    
T  8186341 tgttagagagattgagtgatgtgag 8186317  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 134  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  142 a 142  Q
    |    
T  55907634 a 55907634  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  63 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 146  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  142 agttt 146  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  42 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 141  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  142 a 142  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
Q  43 ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 127  Q
    ||||||||| | |||||||| ||||||||||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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