View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_56 (Length: 247)

Name: NF8577_low_56
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_56
NF8577_low_56
[»] chr4 (4 HSPs)
chr4 (17-231)||(6136102-6136316)
chr4 (112-231)||(2946660-2946779)
chr4 (112-219)||(17405129-17405236)
chr4 (19-107)||(2946929-2947017)
[»] chr6 (3 HSPs)
chr6 (17-231)||(27991409-27991620)
chr6 (19-107)||(20726176-20726264)
chr6 (165-219)||(13627842-13627896)
[»] chr3 (3 HSPs)
chr3 (112-222)||(9021761-9021871)
chr3 (152-208)||(25226627-25226683)
chr3 (19-107)||(9021546-9021634)
[»] chr5 (7 HSPs)
chr5 (117-231)||(15023557-15023671)
chr5 (134-231)||(21788233-21788330)
chr5 (112-231)||(21714319-21714438)
chr5 (112-231)||(13502425-13502544)
chr5 (53-107)||(21714587-21714641)
chr5 (53-107)||(21788502-21788556)
chr5 (156-208)||(16988342-16988394)
[»] chr2 (14 HSPs)
chr2 (112-229)||(17628324-17628441)
chr2 (112-231)||(17673395-17673514)
chr2 (116-224)||(1644617-1644725)
chr2 (115-231)||(19569582-19569698)
chr2 (112-224)||(37081308-37081420)
chr2 (128-213)||(3563566-3563651)
chr2 (44-107)||(17628113-17628176)
chr2 (44-107)||(17673183-17673246)
chr2 (115-176)||(24578681-24578742)
chr2 (22-107)||(37081050-37081135)
chr2 (20-107)||(24578895-24578981)
chr2 (23-107)||(1644879-1644963)
chr2 (19-71)||(3564445-3564497)
chr2 (76-107)||(3563811-3563842)
[»] chr1 (7 HSPs)
chr1 (112-231)||(28538506-28538625)
chr1 (128-231)||(27908301-27908404)
chr1 (146-224)||(23971056-23971134)
chr1 (128-231)||(2900411-2900511)
chr1 (19-107)||(28538766-28538855)
chr1 (19-107)||(2900675-2900762)
chr1 (23-102)||(27908580-27908659)
[»] chr8 (8 HSPs)
chr8 (118-219)||(19442403-19442504)
chr8 (118-219)||(19578554-19578655)
chr8 (112-219)||(15151320-15151427)
chr8 (22-107)||(15151756-15151841)
chr8 (146-219)||(16822010-16822083)
chr8 (20-107)||(19442628-19442714)
chr8 (20-107)||(19578779-19578865)
chr8 (156-208)||(16054807-16054859)
[»] chr7 (5 HSPs)
chr7 (26-107)||(4633497-4633578)
chr7 (141-224)||(4633993-4634076)
chr7 (147-219)||(32238915-32238987)
chr7 (129-208)||(22384190-22384269)
chr7 (46-98)||(22763782-22763834)
[»] scaffold0010 (1 HSPs)
scaffold0010 (152-208)||(235746-235802)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 6136316 - 6136102
Alignment:
Q  17 aaaatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaattgcataagcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6136316 aaaatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataagatatgagtaggtgccaattgcaattgccaaacaattgcataagcc 6136217  T
Q  117 tagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaat 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6136216 tagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgtttaat 6136117  T
Q  217 agtttttctattcat 231  Q
    ||| |||| ||||||    
T  6136116 agtctttccattcat 6136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 2946779 - 2946660
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||||||| | |||| |||| ||  |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2946779 aagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 2946680  T
Q  212 ttaatagtttttctattcat 231  Q
    | |||||| |||| ||||||    
T  2946679 taaatagtctttccattcat 2946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 17405129 - 17405236
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||| | ||| |||||||||||| |||||||||||||| |||||| || ||| |||||||| |||||||||||||||||||||||||||||||||    
T  17405129 aagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgtgttcttcttgcacaatgtcaaatgaaatgt 17405228  T
Q  212 ttaatagt 219  Q
    ||||||||    
T  17405229 ttaatagt 17405236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2947017 - 2946929
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||||    
T  2947017 aatcaattgccaaaagcataagtgtcatataccattgatcataacttcacaagatagaagtaggtgtcaattgcaattgccaaacaatt 2946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 27991409 - 27991620
Alignment:
Q  17 aaaatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaattgcataagcc 116  Q
    |||||||||||||||||||| ||||||| |    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27991409 aaaatcaattgccaaaagcataagtgtcgtgc--cattgatcataact-cataagatatgagtaggtgccaattgcaattgccaaacaattgcataagcc 27991505  T
Q  117 tagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaat 216  Q
    || ||||||| ||||  || |||  |||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  27991506 tatactctggaacataaattctagtttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaat 27991605  T
Q  217 agtttttctattcat 231  Q
    ||| |||| ||||||    
T  27991606 agtctttccattcat 27991620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 20726176 - 20726264
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||| |||||||| ||||||| |||| ||||||||||||||||||||| || || || ||||||||||||||| ||||| ||||    
T  20726176 aatcaattgtcaaaagcataagtgtcgtataacattgatcataacttcataagataggaatatgtgccaattgcaattaccaaataatt 20726264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 13627896 - 13627842
Alignment:
Q  165 caaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 219  Q
    ||||||||||||  |||||| |||||||| |||||||||| ||||||||||||||    
T  13627896 caaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagt 13627842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 9021761 - 9021871
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||||||||| ||||||||  || |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9021761 aagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgt 9021860  T
Q  212 ttaatagtttt 222  Q
    |||||||||||    
T  9021861 ttaatagtttt 9021871  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 25226683 - 25226627
Alignment:
Q  152 ttgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaa 208  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  25226683 ttgattcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 9021546 - 9021634
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||| |||||||| |||||   ||||  |||||||  ||||||||||| || ||||||| ||||||||||||||||||||||||    
T  9021546 aatcaattgtcaaaagcataagtgatgtatacgattgatcgcaacttcataagataggagtaggcgccaattgcaattgccaaacaatt 9021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 117 - 231
Target Start/End: Original strand, 15023557 - 15023671
Alignment:
Q  117 tagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaat 216  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  15023557 tagactttggcacatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaat 15023656  T
Q  217 agtttttctattcat 231  Q
    ||| |||| ||||||    
T  15023657 agtctttccattcat 15023671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 21788330 - 21788233
Alignment:
Q  134 atcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttttctattcat 231  Q
    |||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  21788330 atcctaacttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttcgattcat 21788233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 21714438 - 21714319
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||||| ||| |||   |||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |    
T  21714438 aagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatat 21714339  T
Q  212 ttaatagtttttctattcat 231  Q
    |||||||| |||| ||||||    
T  21714338 ttaatagtctttcgattcat 21714319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 13502425 - 13502544
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||||| ||| |||   |||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| || ||| |||| |    
T  13502425 aagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatacttgtgttcttcttgcacaatatcgaataaaatat 13502524  T
Q  212 ttaatagtttttctattcat 231  Q
    |||||||  |||| ||||||    
T  13502525 ttaatagcctttcgattcat 13502544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 21714641 - 21714587
Alignment:
Q  53 ttgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||    
T  21714641 ttgatcataacttcataagatagaagtaggtgccaattgcaattgccaaagaatt 21714587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 21788556 - 21788502
Alignment:
Q  53 ttgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||    
T  21788556 ttgatcataacttcataagatagaagtaggtgccaattgcaattgccaaagaatt 21788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 16988394 - 16988342
Alignment:
Q  156 ttcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaa 208  Q
    |||||||||||||||| |||||  |||||||| ||||||||  ||||||||||    
T  16988394 ttcacatttcaaagatccatactcgtgttctttttgcacaacatcaaatgaaa 16988342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 17628324 - 17628441
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    |||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  17628324 aagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgt 17628423  T
Q  212 ttaatagtttttctattc 229  Q
    || ||||| |||| ||||    
T  17628424 ttcatagtctttccattc 17628441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 17673395 - 17673514
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    |||| |||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  17673395 aagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgt 17673494  T
Q  212 ttaatagtttttctattcat 231  Q
    || ||||| |||| ||||||    
T  17673495 ttcatagtctttccattcat 17673514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 1644725 - 1644617
Alignment:
Q  116 ctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaa 215  Q
    ||||||||||  |||||||||||| |||||||||||||  |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  1644725 ctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacctatgctcttcttgcacaatgtcaaatgaaatgtttaa 1644626  T
Q  216 tagtttttc 224  Q
    |||| ||||    
T  1644625 tagtctttc 1644617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 19569698 - 19569582
Alignment:
Q  115 cctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgttta 214  Q
    |||||||| | | |||||||||||| ||||||||| || | |||||| |||||| |||||||  |||||| |||||||||||||||||||||||||||||    
T  19569698 cctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgttta 19569599  T
Q  215 atagtttttctattcat 231  Q
    ||||| |||| ||||||    
T  19569598 atagtctttccattcat 19569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 37081308 - 37081420
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    |||||||||||| ||  ||||||  |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  37081308 aagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatacttgtgttcttcttgcacaatataaaataaaatgt 37081407  T
Q  212 ttaatagtttttc 224  Q
    || ||||| ||||    
T  37081408 ttgatagtctttc 37081420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 3563651 - 3563566
Alignment:
Q  128 acatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgttt 213  Q
    |||||||||||| |||||||||||||| || | ||||||||||||||||| |||| |||||||| | |||||| ||||||||||||    
T  3563651 acatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtgctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 17628113 - 17628176
Alignment:
Q  44 catatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  17628113 catataccattgatcataacttcataagataggagtatgtgccaattgcaattgccaaacaatt 17628176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 17673183 - 17673246
Alignment:
Q  44 catatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||| ||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||    
T  17673183 catataccattgatcataacttcataagataggagtatgtgccaattgcaattggcaaacaatt 17673246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 24578742 - 24578681
Alignment:
Q  115 cctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcata 176  Q
    |||||||||||| |||||||| ||| |||||||||||||  |||||||||||||||||||||    
T  24578742 cctagactctggaacatggattctagcttagagctaattatttcacatttcaaagattcata 24578681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 37081050 - 37081135
Alignment:
Q  22 caattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||| ||||||| ||||| |  ||||||||||||| |||||||| |  ||||| ||||||||||||||||||| |||||||||    
T  37081050 caattgctaaaagcataagtgccgcatatcattgatcacaacttcattaaatatgactaggtgccaattgcaattggcaaacaatt 37081135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 24578981 - 24578895
Alignment:
Q  20 atcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||||||| |||| ||||  | |||| |||||||||||||| |||||| || |||||||||||  |||||||||||||||||||    
T  24578981 atcaattgccaagagcataagtaccttataccattgatcataact-cataagataggagtaggtgcccgttgcaattgccaaacaatt 24578895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 1644963 - 1644879
Alignment:
Q  23 aattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||| |||| | ||||| |||| ||||||| ||| ||||||||| || ||||| ||| |||||||||||| |||||||||    
T  1644963 aattgccaagagcataggtgtcgtataccattgattatatcttcataagataggagtatgtgtcaattgcaattgtcaaacaatt 1644879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3564497 - 3564445
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataag 71  Q
    ||||||||||||||| || ||||||  |||| |||||||||||||||||||||    
T  3564497 aatcaattgccaaaaacataagtgttgtataccattgatcataacttcataag 3564445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 3563842 - 3563811
Alignment:
Q  76 gagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||||||||||||||||||||||||||    
T  3563842 gagtaggtgccaattgcaattgccaaacaatt 3563811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 28538625 - 28538506
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    ||||||||||||  | |||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  28538625 aagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttcttctagcacaatgtcaaatgaaatgt 28538526  T
Q  212 ttaatagtttttctattcat 231  Q
    || ||| | |||| ||||||    
T  28538525 ttcataatctttccattcat 28538506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 27908404 - 27908301
Alignment:
Q  128 acatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttttctat 227  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||| |||| || | |||| ||    
T  27908404 acatggatcctagcttagagctaattggttcacatttcaaatattcatacttgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccat 27908305  T
Q  228 tcat 231  Q
    ||||    
T  27908304 tcat 27908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 23971056 - 23971134
Alignment:
Q  146 agctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttttc 224  Q
    ||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  23971056 agctaattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttc 23971134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 2900511 - 2900411
Alignment:
Q  128 acatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttttctat 227  Q
    |||||||||||| |||||||||||||| ||  ||||||||||||| |||| |||||||||   ||||||||||||||||||||||||||||| |||| ||    
T  2900511 acatggatcctagcttagagctaattggttgtcatttcaaagatttatacttgtgttctt---gcacaatgtcaaatgaaatgtttaatagtctttccat 2900415  T
Q  228 tcat 231  Q
    ||||    
T  2900414 tcat 2900411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 28538855 - 28538766
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatc-attgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||| || |||||| |||||||||||| | |||||||||||||||||||  || ||| |||||| |||||||||||||||||||||    
T  28538855 aatcaattaccgaaagcataagtgtcatatacccattgatcataacttcataaaataggagaaggtgctaattgcaattgccaaacaatt 28538766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 2900762 - 2900675
Alignment:
Q  19 aatcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||| ||||||||| || |||| |||| ||||||||||||||||||||| || ||||| ||| ||| ||||| ||||||||||||    
T  2900762 aatcaatttccaaaagcataaatgtcgtataccattgatcataacttcataagataagagtacgtgtcaactgcaa-tgccaaacaatt 2900675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 27908659 - 27908580
Alignment:
Q  23 aattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaa 102  Q
    |||||||||||||| ||||||| |||| |||||| |||||||||||||  ||  |||| ||||||| |||||||||||||    
T  27908659 aattgccaaaagcataagtgtcgtataccattgaccataacttcataaaatagaagtatgtgccaactgcaattgccaaa 27908580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 19442504 - 19442403
Alignment:
Q  118 agactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaata 217  Q
    ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||    
T  19442504 agactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgttcatatcgcacaatatcaaatgaaatgtttaata 19442405  T
Q  218 gt 219  Q
    ||    
T  19442404 gt 19442403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 19578655 - 19578554
Alignment:
Q  118 agactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaata 217  Q
    ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||| | | ||||||| |||||||||||||||||||    
T  19578655 agactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgttcatatcgcacaatatcaaatgaaatgtttaata 19578556  T
Q  218 gt 219  Q
    ||    
T  19578555 gt 19578554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 15151427 - 15151320
Alignment:
Q  112 aagcctagactctggcacatggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgt 211  Q
    |||| |||| ||||| | |||||||||| |||||||| ||||  ||||||| |||| |||| |||| ||||||||||||||| |||||||||||||||||    
T  15151427 aagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 15151328  T
Q  212 ttaatagt 219  Q
    ||||||||    
T  15151327 ttaatagt 15151320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 15151841 - 15151756
Alignment:
Q  22 caattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    ||||||||||||||| ||||||| |||| |||| |||||||||||||||| |  |||||||||||||||||||||| |||||||||    
T  15151841 caattgccaaaagcataagtgtcgtataccattcatcataacttcataagattggagtaggtgccaattgcaattgtcaaacaatt 15151756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 16822083 - 16822010
Alignment:
Q  146 agctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 219  Q
    ||||||||| |||||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  16822083 agctaattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagt 16822010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 19442714 - 19442628
Alignment:
Q  20 atcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||||||| |||| ||||| | |||| |||||||||||||| |||||  || ||||||||||||||||||||| ||||||||||    
T  19442714 atcaattgccaagagcataagtgccttataccattgatcataact-cataatataggagtaggtgccaattgcaatttccaaacaatt 19442628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 19578865 - 19578779
Alignment:
Q  20 atcaattgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||||||| |||| ||||| | |||| |||||||||||||| |||||  || ||||||||||||||||||||| ||||||||||    
T  19578865 atcaattgccaagagcataagtgccttataccattgatcataact-cataatataggagtaggtgccaattgcaatttccaaacaatt 19578779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 16054807 - 16054859
Alignment:
Q  156 ttcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaa 208  Q
    |||||||||||||||| |||||  |||||||| ||||||||| ||||||||||    
T  16054807 ttcacatttcaaagatccatactcgtgttctttttgcacaatctcaaatgaaa 16054859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 4633497 - 4633578
Alignment:
Q  26 tgccaaaagcacaagtgtcatatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgccaaacaatt 107  Q
    |||||||| || ||||||  ||| |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  4633497 tgccaaaaacataagtgtggtatgtcattgatcataacttcataaaatatgagtaggtgccaattgcaattaccaaacaatt 4633578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 4633993 - 4634076
Alignment:
Q  141 cttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtttttc 224  Q
    |||| ||| ||||| |||||||||||||||||||||  ||| || |||||||| ||||||| ||||||||||||||||| ||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttc 4634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 32238915 - 32238987
Alignment:
Q  147 gctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 219  Q
    |||||||  |||||| || |||||||||||| || ||| || ||||||||||||||||||||| |||||||||    
T  32238915 gctaattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagt 32238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 22384190 - 22384269
Alignment:
Q  129 catggatcctaacttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaa 208  Q
    |||||||||||  ||||| | | ||||||||||||| ||||| ||||||   ||||||| |||||||||||||| |||||    
T  22384190 catggatcctatattagaaccacttgattcacattttaaagactcatactcatgttctttttgcacaatgtcaactgaaa 22384269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 22763834 - 22763782
Alignment:
Q  46 tatatcattgatcataacttcataaggtatgagtaggtgccaattgcaattgc 98  Q
    |||| ||||||||||||||||||||| ||  |||||||  |||||||||||||    
T  22763834 tataacattgatcataacttcataagatagcagtaggtatcaattgcaattgc 22763782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 235746 - 235802
Alignment:
Q  152 ttgattcacatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaa 208  Q
    ||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  235746 ttgattcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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