View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_57 (Length: 247)
Name: NF8577_low_57
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_57 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 18617630 - 18617847
Alignment:
| Q |
19 |
agaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctcaattggtagagaaaaacacacagtagtagcagacatggat |
118 |
Q |
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| T |
18617630 |
agaaatcaccatcatcaccatggcatcttcaacctttccaacagtgaacaaatgcacctccattggtagagaaaagcacacagtagtagcagacatggat |
18617729 |
T |
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| Q |
119 |
ggaaccttactaataggtcgtagttccttcccatattttgctcttatagcctttgaagttggtggagttcttagacttctcatctatctcctagcttcac |
218 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18617730 |
ggaaccttactaataggtcgtagttcttttccatattttgctcttatagcctttgaagttggtggagttcttagacttctcatctatctcctagcttcac |
18617829 |
T |
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| Q |
219 |
caatcgcagcgattctct |
236 |
Q |
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|||| || |||||||||| |
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| T |
18617830 |
caatagccgcgattctct |
18617847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 17159121 - 17159225
Alignment:
| Q |
38 |
atggcatcttcaacctttccaacagtgaacaaatgcacctcaattggtagagaaaaacacacagtagtagcagacatggatggaaccttactaataggtc |
137 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||||||| ||||||||||||||||| |
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| T |
17159121 |
atggcatcttcaaccttttgaacagtgaacaaatgtacctcaattggtagagaaaagcacacagta-tagcaaatatggatgaaaccttactaataggtc |
17159219 |
T |
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| Q |
138 |
gtagtt |
143 |
Q |
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|||||| |
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| T |
17159220 |
gtagtt |
17159225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 90513 - 90571
Alignment:
| Q |
19 |
agaaatcaccatcatcacca-tggcatcttcaacctttccaacagtgaacaaatgcacc |
76 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
90513 |
agaaatcaccaaaatcaccaatggcatcttcaacctttccaacaatgatcaaatgcacc |
90571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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