View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_58 (Length: 243)
Name: NF8577_low_58
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 12236276 - 12236413
Alignment:
| Q |
85 |
gaagcaaccaaccttgagatttgaaggtgtagcggaatatgcagaccaaagagcgcgtaataagtcttgtgcatccttcgtagttgatgaagaagaagat |
184 |
Q |
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| T |
12236276 |
gaagcaaccaaccttgagatttgaaggtgtagcggaatatgcagaccaaagagcgcgtaataagtcttgtgcatcctttgtggttgatgaagaagaagat |
12236375 |
T |
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| Q |
185 |
gaagaagacgacggctttgccattttctattcacttca |
222 |
Q |
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| T |
12236376 |
gaagcagacgacggctttgccattttctattcacttca |
12236413 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 6983745 - 6983814
Alignment:
| Q |
93 |
caaccttgagatttgaaggtgtagcggaatatgcagaccaaagagcgcgtaataag-tcttgtgcatcctt |
162 |
Q |
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| T |
6983745 |
caaccttgagatttgtaggggttgcggaataagcagaccaaagagtgcg-gataagatcttgtgcatcctt |
6983814 |
T |
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