View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_6 (Length: 576)
Name: NF8577_low_6
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 10315538 - 10314983
Alignment:
| Q |
1 |
gattgactcgaatttgtgagaagccattggcactggtagagatttgtgataacagtaaacctgaaaggtagaaaaaa-tagaaacgttcaaaatgaaatc |
99 |
Q |
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| T |
10315538 |
gattgactcgaatttgtgagaagccattggcactggtagagatttgtgataacagtaaacctgaaaggtagaaaaaaatagaaatgttcaaaatgaaatc |
10315439 |
T |
|
| Q |
100 |
ataatgtgtatcttttgatccctcatttgatattgaattcaactaattatcggacatagaattttaagtggtttctgcgaaggagtttcatcaacactac |
199 |
Q |
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| T |
10315438 |
ataatgtgtatcttttgatccctcatttgatattgaattcaacaaattatcggacatagaattttaagtggtatctgcgaaggagtttcatcaacactac |
10315339 |
T |
|
| Q |
200 |
aataatacaagaacgtataatcatgaattatgaaagcaagaacagtgttaattgagcttagtctatatgtaactctgttgtatgatcagagtcctaaaac |
299 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10315338 |
aataatacaagaacatataatcatgaactatgaaagcaagaacagtgttaattgagcttagtctatatgtaactctgttgtatgatcagagtcctaaaac |
10315239 |
T |
|
| Q |
300 |
accgtagagtaatnnnnnnnnnnnnnttccacaaaaattatgagaaactaatttcttcggctaaatgtagcgtagaatgtgaaacagtttgctagtctca |
399 |
Q |
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| T |
10315238 |
gccgtagagtaataaaaagaaaaaaattccacaaaaattatgagaaactaatttctttggctaaatgtagcgtagaatgtgaaacggtttgctagtctca |
10315139 |
T |
|
| Q |
400 |
tgatataatcagcttaccagagatccaaacagactaatgtactatatcat----nnnnnnnnnnnnnnnnngtatacctcattagattctgaaccacatg |
495 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10315138 |
cgatacaatcagcttaccagagatccaaacagactaatgtactatatcataaaataaaaataaattaaaaagtatacctcattagattctgaaccacatg |
10315039 |
T |
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| Q |
496 |
caatgtatccatccaaaacagataaaccaacgaaattctggataagaacgatgaac |
551 |
Q |
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| T |
10315038 |
caatgtatccatccaaaacagataaaccaacgaaattctggataagaacgatgaac |
10314983 |
T |
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