View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8577_low_60 (Length: 240)
Name: NF8577_low_60
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 758048 - 758251
Alignment:
| Q |
20 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758048 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
758147 |
T |
|
| Q |
120 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758148 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
758247 |
T |
|
| Q |
220 |
aaca |
223 |
Q |
| |
|
|||| |
|
|
| T |
758248 |
aaca |
758251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 36989323 - 36989120
Alignment:
| Q |
20 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989323 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
36989224 |
T |
|
| Q |
120 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989223 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
36989124 |
T |
|
| Q |
220 |
aaca |
223 |
Q |
| |
|
|||| |
|
|
| T |
36989123 |
aaca |
36989120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 37014762 - 37014559
Alignment:
| Q |
20 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014762 |
gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaag |
37014663 |
T |
|
| Q |
120 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014662 |
atgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagac |
37014563 |
T |
|
| Q |
220 |
aaca |
223 |
Q |
| |
|
|||| |
|
|
| T |
37014562 |
aaca |
37014559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 19180800 - 19180870
Alignment:
| Q |
156 |
ggcacattttggtacctaaaattgaaat---ggaatcttttgtaagaaactttaattaacttgagacaaca |
223 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19180800 |
ggcacattttggtaactaagattgaaatattggaagcttttgtaagaaactttaattaacttgagacaaca |
19180870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University