View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_61 (Length: 239)
Name: NF8577_low_61
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30611371 - 30611593
Alignment:
| Q |
1 |
atctttattaagcaacatctctctaatcttagtatgattagcccttactgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30611371 |
atctttattaagcaacatctctctaatcttagtatgattagaccttactgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaa |
30611470 |
T |
|
| Q |
101 |
acattatccttagtatagaatccatcttcacctttctcaacttccacaccaactttcaagttgtttcccatcatcctagcattcaatatctggtcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30611471 |
acattatccttagtatagaatccatcttcacctttctcaacttccacaccaactttcaagttgtttcccatcatcctagcattcaatatctggtcaccaa |
30611570 |
T |
|
| Q |
201 |
catttggcaacaaaaccaattga |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30611571 |
catttggcaacaaaaccaattga |
30611593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 30594027 - 30594245
Alignment:
| Q |
5 |
ttattaagcaacatctctctaatcttagtatgattagcccttactgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaaacat |
104 |
Q |
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||||| || ||||||||||||||||| | ||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
30594027 |
ttattcagtaacatctctctaatcttggcatgattagctcttactgtcttactagtttcattttcatcatccatcacaatgctcacagctttacaaacac |
30594126 |
T |
|
| Q |
105 |
tatccttagtatagaatccatcttcacctttctcaacttccacaccaactttcaagttgtttcccatcatcctagcattcaatatctggtcaccaacatt |
204 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||| ||| |
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| T |
30594127 |
tatccttagtatataatccatcttcatctttctcaacttccacaccaactttcaagttatttgccattatcctagcattcaatatccggtcaccaaaatt |
30594226 |
T |
|
| Q |
205 |
tggcaacaaaaccaattga |
223 |
Q |
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||||||||||||||||||| |
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| T |
30594227 |
tggcaacaaaaccaattga |
30594245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 35030189 - 35030101
Alignment:
| Q |
71 |
tcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatccatcttca---cctttctcaacttccacaccaacttt |
156 |
Q |
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|||| ||||||||| ||||||||||||| ||||| || || ||| | || ||||||||| |||||||||||||||||||||||||| |
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| T |
35030189 |
tcatgcatcacaatcttcacagctttgcacacattttcttttgtaaacaacccatcttcatcacctttctcaacttccacaccaacttt |
35030101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 35011226 - 35011315
Alignment:
| Q |
67 |
ctcatcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatcca---tcttcacctttctcaacttccacaccaac |
153 |
Q |
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|||||||| ||||||||| ||||||||||||| ||| | || || ||| | || ||| ||||||||||||||||||||||||||||| |
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| T |
35011226 |
ctcatcatccatcacaatcttcacagctttgcacacactttcttttgtaaacaacccatcttcttcacctttctcaacttccacaccaac |
35011315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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