View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_62 (Length: 238)
Name: NF8577_low_62
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 32901736 - 32901649
Alignment:
| Q |
139 |
aatcataatcattcaacaaaattaagaaactgaatctgaaaaattgaagaaccctagnnnnnnntctcacctttgggtctctgtgctg |
226 |
Q |
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| T |
32901736 |
aatcataatcattcaacaaaattaagaaactgaatctgaaaaattgaagaaccctagaaaaaaatctcacctttgggtctctgtgctg |
32901649 |
T |
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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32901859 - 32901822
Alignment:
| Q |
16 |
acatcacacatagtatgcatgcaatcagatcaagcaat |
53 |
Q |
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| T |
32901859 |
acatcacacatagtatgcatgcaatcagatcaagcaat |
32901822 |
T |
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