View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_63 (Length: 234)
Name: NF8577_low_63
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 17755426 - 17755603
Alignment:
| Q |
19 |
caggtaggctacgagataatacgaagttgtggcagaacaagggactagcaacaacattcccattggacaacaatagaacaaaactcaatacaacagtatc |
118 |
Q |
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| T |
17755426 |
caggtaggctacgagataatacaaagttgtggcagaacaagggactagcaacaacattcctattggacaacaatagaacaaaactcaatacaacaatatc |
17755525 |
T |
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| Q |
119 |
caaacctaaaactcctaaggcaagcaaaaaacaagcaaaattacgaaaataccaagcctacgaacttcagcaaatggg |
196 |
Q |
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| T |
17755526 |
caaacctaaaactcctgaggcaagcaaaaaacaagcaaaactacgaaaatactaagcctacgaacttcagcaaatggg |
17755603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 17755625 - 17755654
Alignment:
| Q |
197 |
aaagtcatcaacaaagacgaggcattcaaa |
226 |
Q |
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| T |
17755625 |
aaagtcatcaacaaagacgaggcattcaaa |
17755654 |
T |
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