View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_66 (Length: 230)

Name: NF8577_low_66
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_66
NF8577_low_66
[»] chr7 (12 HSPs)
chr7 (14-214)||(31576441-31576641)
chr7 (14-213)||(31595499-31595698)
chr7 (14-195)||(31608720-31608901)
chr7 (37-214)||(31605107-31605284)
chr7 (35-214)||(31614975-31615154)
chr7 (41-213)||(31618712-31618884)
chr7 (24-179)||(33304766-33304921)
chr7 (24-180)||(31572441-31572597)
chr7 (35-206)||(31585859-31586030)
chr7 (24-180)||(31541494-31541650)
chr7 (24-180)||(31532837-31532993)
chr7 (19-180)||(31438609-31438770)
[»] chr1 (1 HSPs)
chr1 (35-214)||(52173919-52174098)
[»] chr4 (1 HSPs)
chr4 (19-165)||(15062956-15063102)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 31576641 - 31576441
Alignment:
Q  14 aggagcacagactcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaa 113  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||||||||| ||||||||||    
T  31576641 aggatcacaaactcatttcgggataaattaggccaaggaggatatggtgttgtttacaaagcaagtttaattgatggtcgtcaagtggcggtgaaagtaa 31576542  T
Q  114 taaacgaatcaaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgtta 213  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||    
T  31576541 taaatgaatccaaaggaaatggagaagaattcataaatgaagttgctagcattagtcgaacatcacacatgaacattgtgtcccttttaggcttttgtta 31576442  T
Q  214 t 214  Q
    |    
T  31576441 t 31576441  T

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Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 31595698 - 31595499
Alignment:
Q  14 aggagcacagactcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaa 113  Q
    |||| |||| ||||||| || |||||||||||||| ||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||    
T  31595698 aggatcacaaactcattccgtgataaattaggccacggaggatatggtgttgtgtacaaagcaagtttaacggatggtcgtcaagtggcagtgaaagtaa 31595599  T
Q  114 taaacgaatcaaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgtta 213  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||| ||||||||    
T  31595598 taaacgagtcaaaaggaaatggggaagagttcataaatgaagttgctagcatcagtagaacatcacacatgaacattgtgtcacttttaggttattgtta 31595499  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 31608901 - 31608720
Alignment:
Q  14 aggagcacagactcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaa 113  Q
    |||| |||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||    
T  31608901 aggatcacaaactcatttcgagataaattaggccatggaggatatggtgttgtgtacaaagcaagtttaacggatggtcgtcaagtggcagtgaaagtaa 31608802  T
Q  114 taaacgaatcaaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtc 195  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  31608801 taaacgagtcaaaaggaaatggggaagagttcataaatgaagttgctagcatcagtagaacatcacacctgaacattgtgtc 31608720  T

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Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 31605284 - 31605107
Alignment:
Q  37 taaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatcaaaaggaaatggg 136  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||||||||| |||||||||||||| ||||| |||||||||||     
T  31605284 taaattaggccaaggaggatatggtgttgtttacaaagcaagtttaattgatggtcgtcaagtggcggtgaaagtaataaatgaatccaaaggaaatgga 31605185  T
Q  137 gaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgttat 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||    
T  31605184 gaagaattcataaatgaagttgctagcattagtcgaacatcacacatgaacattgtgtcccttttaggcttttgttat 31605107  T

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Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 31615154 - 31614975
Alignment:
Q  35 gataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatcaaaaggaaatg 134  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||| ||||| ||||||||| |||| || ||||| |||||||    
T  31615154 gataaattaggccaaggaggatatggtgttgtgtacaaagcaagtttaattgatggtcgtcatgtggcggtgaaagtactaaatgagtcaaagggaaatg 31615055  T
Q  135 gggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgttat 214  Q
    | ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||| |||||| |||||||    
T  31615054 gagaagaattcataaatgaagttgctagcattagtcgaacattacacatgaacattgtatcccttttaggcttttgttat 31614975  T

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Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 31618884 - 31618712
Alignment:
Q  41 ttaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatcaaaaggaaatggggaag 140  Q
    |||||||||||||| ||||||||||| |||||||||| |||||   || ||||||||||||||||||||||||||| |||  |||| |||||||| ||||    
T  31618884 ttaggccaaggagggtatggtgttgtctacaaagcaagtttatataatagtcgtcaagtggcagtgaaagtaataagcgagacaaagggaaatggagaag 31618785  T
Q  141 aattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgtta 213  Q
    ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||| |||| ||||||||    
T  31618784 aattcataaatgaagttgctagcattagtaggacatcacatatgaacattgtgtcgcttttaggatattgtta 31618712  T

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Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 33304766 - 33304921
Alignment:
Q  24 actcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatc 123  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||  ||| | |||||||||||||||||||||||||||||||| || ||    
T  33304766 actcatttcgagataaattaggtcaaggaggatatggtgttgtgtacaaagcaagcttacctgatggtcgtcaagtggcagtgaaagtaataaaagagtc 33304865  T
Q  124 aaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcac 179  Q
     || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||    
T  33304866 caagggaaatggagaagaatttataaatgaagttgctagcattagtagaacgtcac 33304921  T

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Target: chr7; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 31572441 - 31572597
Alignment:
Q  24 actcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatc 123  Q
    |||||||||| |||||||||||  |||||||||||||||| || |||||||||| |||| | |||||| |||||||||| || |||||||||||||||||    
T  31572441 actcatttcgagataaattaggttaaggaggatatggtgtcgtgtacaaagcaagtttacctgatggttgtcaagtggcggttaaagtaataaacgaatc 31572540  T
Q  124 aaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcaca 180  Q
     || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31572541 taagggagatggagaagaattcataaatgaagttgctagcattagtagaacatcaca 31572597  T

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Target: chr7; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 31586030 - 31585859
Alignment:
Q  35 gataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatcaaaaggaaatg 134  Q
    ||||||||||| |||||||||||||||||||| |||||||||  ||||   ||||||||||| ||||| |||||||||||||| ||| | || |||||||    
T  31586030 gataaattaggtcaaggaggatatggtgttgtgtacaaagcatgtttaagtgatggtcgtcatgtggcggtgaaagtaataaatgaaactaagggaaatg 31585931  T
Q  135 gggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggct 206  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| || ||| ||||||    
T  31585930 gagaagaattcataaatgaagtttctagcattagtagaacatcacacatcaacattgtatcacttttaggct 31585859  T

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Target: chr7; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 31541650 - 31541494
Alignment:
Q  24 actcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatc 123  Q
    |||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||  ||| | |||||||||||||| ||||||||| | ||||| || ||    
T  31541650 actcgtttcgagataaattaggtcaaggaggatatggtgttgtttacaaagcaaacttacctgatggtcgtcaagtagcagtgaaaattataaatgagtc 31541551  T
Q  124 aaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcaca 180  Q
     || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  31541550 taagggaaatggagaagatttcataaatgaagttgctagcattagtagaacatcaca 31541494  T

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Target: chr7; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 180
Target Start/End: Complemental strand, 31532993 - 31532837
Alignment:
Q  24 actcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatc 123  Q
    |||||||||| || | ||| || ||||||||||||||| | || ||||||||||  ||| | ||||||||| ||||||| ||||||||||||||||| ||    
T  31532993 actcatttcgagacagattgggtcaaggaggatatggtatggtttacaaagcaaacttacctgatggtcgtgaagtggcggtgaaagtaataaacgagtc 31532894  T
Q  124 aaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcaca 180  Q
    ||| |||||| | |||||||||| |||||||||||| ||||||||||||||||||||    
T  31532893 aaagggaaatagagaagaattcacaaatgaagttgcaagcattagtagaacatcaca 31532837  T

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Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 31438609 - 31438770
Alignment:
Q  19 cacagactcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaac 118  Q
    |||| |||||||||| ||||| || || |||||||||||||||||||| |||||||||| |||| | ||||| ||||| || || |||||||||||||      
T  31438609 cacaaactcatttcgagataagttgggtcaaggaggatatggtgttgtgtacaaagcaagtttacctgatggccgtcatgttgcggtgaaagtaataagt 31438708  T
Q  119 gaatcaaaaggaaatggggaagaattcataaatgaagttgctagcattagtagaacatcaca 180  Q
    || |  || ||| | || |||||||| |||||||||||||| ||||| |||| |||||||||    
T  31438709 gagtgcaagggagacggagaagaatttataaatgaagttgcaagcataagtaaaacatcaca 31438770  T

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Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 52173919 - 52174098
Alignment:
Q  35 gataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaacgaatcaaaaggaaatg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| || |||||||||||||| | ||| ||  |||    
T  52173919 gataaattaggccaaggaggatatggtgttgtatacaaagcaagtttacctgatggtcgtcaagtggctgttaaagtaataaacgagttaaagggggatg 52174018  T
Q  135 gggaagaattcataaatgaagttgctagcattagtagaacatcacacacgaacattgtgtcccttgtaggctattgttat 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||    
T  52174019 gagaagaattcataaatgaagttgctagcattagtagaacatcacacgtgaacattgtgtcacttttaggctattgttat 52174098  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 15062956 - 15063102
Alignment:
Q  19 cacagactcatttcgggataaattaggccaaggaggatatggtgttgtatacaaagcaattttatccgatggtcgtcaagtggcagtgaaagtaataaac 118  Q
    |||| |||| ||||| ||||| || ||||||||||||||||||||||| |||||||| | |||| | ||||| ||||| || || |||||||| |||| |    
T  15062956 cacaaactcgtttcgagataagttgggccaaggaggatatggtgttgtttacaaagccagtttacctgatggccgtcatgtagcggtgaaagtgataagc 15063055  T
Q  119 gaatcaaaaggaaatggggaagaattcataaatgaagttgctagcat 165  Q
    || |  || ||||| || |||||||| |||||||||||||| |||||    
T  15063056 gagtgcaagggaaacggagaagaatttataaatgaagttgcaagcat 15063102  T

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