View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8577_low_67 (Length: 229)

Name: NF8577_low_67
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8577_low_67
NF8577_low_67
[»] chr8 (5 HSPs)
chr8 (20-216)||(34593312-34593508)
chr8 (20-62)||(38609723-38609765)
chr8 (20-62)||(38794507-38794549)
chr8 (112-176)||(38609761-38609829)
chr8 (112-176)||(38794545-38794613)
[»] chr4 (1 HSPs)
chr4 (20-176)||(33078856-33079004)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 34593312 - 34593508
Alignment:
Q  20 aattgaacaattcatttgaaatttatttacaactgtgaaataagtgtgtacaggtggatattgtgattttgaaaggtttctcgtgtaactggaatataat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34593312 aattgaacaattcatttgaaatttatttacaactgtgaaataagtgtgtacaggtggatattgggattttgaaagttttctcgtgtaactggaatataat 34593411  T
Q  120 tatcaaagagagtcatagttgttggatcaaagatacctaataaacatcttaaagcacaataccagtgcaccacatctgtttccctctcactttctct 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  34593412 tatcaaagagagtcatggttgttggatcaaagatacctaataaacatcttaaagcacaatatcagcgcaccacatctgtttccctctcactttctct 34593508  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 38609723 - 38609765
Alignment:
Q  20 aattgaacaattcatttgaaatttatttacaactgtgaaataa 62  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  38609723 aattgaacaatccatttgaaatttatttacaacagtgaaataa 38609765  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 38794507 - 38794549
Alignment:
Q  20 aattgaacaattcatttgaaatttatttacaactgtgaaataa 62  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  38794507 aattgaacaatccatttgaaatttatttacaacagtgaaataa 38794549  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 38609761 - 38609829
Alignment:
Q  112 aatataattatcaaagagagtcatagttgttggatcaaaga----tacctaataaacatcttaaagcac 176  Q
    |||| |||||||| ||  |||||| ||||||||||||||||    ||||||||||||||||||||||||    
T  38609761 aataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcac 38609829  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 38794545 - 38794613
Alignment:
Q  112 aatataattatcaaagagagtcatagttgttggatcaaaga----tacctaataaacatcttaaagcac 176  Q
    |||| |||||||| ||  |||||| ||||||||||||||||    ||||||||||||||||||||||||    
T  38794545 aataaaattatcagaggaagtcatggttgttggatcaaagaaaggtacctaataaacatcttaaagcac 38794613  T

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Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 33078856 - 33079004
Alignment:
Q  20 aattgaacaattcatttgaaatttatttacaactgtgaaataagtgtgtacaggtggatattgtgattttgaaaggtttctcgtgtaactggaatataa- 118  Q
    |||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||||||||||||||||||||||||     
T  33078856 aattgaacaattcatttgaaatttatttacaactgtg-----------tgcaggtggatattgtgattttgaaaggtttctcgtgtaactggaatataat 33078944  T
Q  119 --ttatcaaagagagtcatagttgttggatcaaagatacctaataaacatcttaaagcac 176  Q
      |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  33078945 aattatcaaagaaagtcatggttgttggatcaaagatacctaataaacatcttaaagcac 33079004  T

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