View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_7 (Length: 550)
Name: NF8577_low_7
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 4092127 - 4091589
Alignment:
| Q |
1 |
tcctctttttcttttagttctctggttgagaaggatnnnnnnngaagctgttattgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaat |
100 |
Q |
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| T |
4092127 |
tcctctttttcttttagttctctggttgagaaggataaaaaaagaagctgttattgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaat |
4092028 |
T |
|
| Q |
101 |
cttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagtggataatgcttggggnnnnnnnntactacttgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4092027 |
cttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacgaaccctagcctagtggataatgcttggggaaaaaaa-tactacttgtg |
4091929 |
T |
|
| Q |
201 |
tatttggatgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttann |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091928 |
tatttggatgctagcatttgttattacatgcaagtttgagactagggttaatattttatttaggatattttctaaattaaaacaaatattaatctttatt |
4091829 |
T |
|
| Q |
301 |
nnnnnnaataataattaatgagattagcaaaatcaattttaaaagaaaattttgatgtaagtcaaatattaaaataattattactgttgatgatattgtt |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091828 |
ttttttaataataat----gagattagcaaaatcaattttaaaagaaaattttgatgcaagtcaaatattaaaataattattactgttgatgatattgtt |
4091733 |
T |
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| Q |
401 |
catatttgttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaa |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4091732 |
catatttgttaaatggagcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaattaaaaaattcaaa |
4091633 |
T |
|
| Q |
501 |
gacattccaaacagaagcattccttctcctatctctgcttctcc |
544 |
Q |
| |
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| T |
4091632 |
gaaattccaaacagaagcattccttctcctatctctgcttctcc |
4091589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 532
Target Start/End: Original strand, 48182321 - 48182435
Alignment:
| Q |
418 |
gcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaag |
517 |
Q |
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|||||||||||||||||||||| || || ||||| ||||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
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| T |
48182321 |
gcagatttcatatgggaagacagccactaataatagtagcagatgcagaactgtgtaaagaggttggaatcaaaaaatttaaagacattccaaacagaag |
48182420 |
T |
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| Q |
518 |
cattccttctcctat |
532 |
Q |
| |
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|| ||| |||||||| |
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| T |
48182421 |
cactccctctcctat |
48182435 |
T |
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