View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_70 (Length: 208)
Name: NF8577_low_70
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 12739936 - 12740110
Alignment:
| Q |
11 |
tttggtgtttatatgttgatataaatttgaatatgaatttctgctggctgattttatgttcgataatatgatctgtttgattgtaattcaatactatcgg |
110 |
Q |
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| T |
12739936 |
tttgttgtttatatcttgatataaatttgaatatgaatttcggttggctgattttatgttcgataatatgatctgtttgattgtaattcaatactatcgg |
12740035 |
T |
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| Q |
111 |
tgatttcgatgttcgtatttatattgatgacatgacttacattttatttaatatgatttgatcatatgtatatat |
185 |
Q |
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| T |
12740036 |
tgatttcgatgttcgaatttacattgatgacatgacttacattttatttaatatgatttgatcatatatatatat |
12740110 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 17196632 - 17196559
Alignment:
| Q |
11 |
tttggtgtttatatgttgatataaatttgaatatgaatttctgctggctgattttatgttcgataatatgatct |
84 |
Q |
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| T |
17196632 |
tttgttgtttatatgttgatataaatttgaatatgaatttcggttggctgattttatgttcgataatatgatct |
17196559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 17196008 - 17196065
Alignment:
| Q |
133 |
attgatgacatgacttacattttatttaatatgatttgatcatatgtatatatgttgt |
190 |
Q |
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| T |
17196008 |
attgatgacatgacttacattttatttaatatgatttgttcatatgtatatatgttgt |
17196065 |
T |
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