View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_8 (Length: 536)
Name: NF8577_low_8
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_8 |
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| [»] scaffold0036 (2 HSPs) |
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| [»] scaffold2116 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 90399 - 90715
Alignment:
| Q |
19 |
acaataacatttgatatgttagagcacgggtttgaaggcgtaattctttctccacttgatgtgtgtaagtattgtgctaggatcttcgaaacaaaacaaa |
118 |
Q |
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| T |
90399 |
acaacaacatttgatatgttagagcacgggttcgaaggcgtaattctttctccacttgatgcgtgtaagtattgtgctaggatcttcgaaacaaaacaaa |
90498 |
T |
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| Q |
119 |
aacacatgagtttttgttctaggatcttgcttttcaagtgtaattgctgagtttgtaaaataaaatttagatcaagtttgttaatgtcaaattagtcatc |
218 |
Q |
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| T |
90499 |
aacaca--------------acgatcttgcttttcaagtgtaattgctgagtttgtaaaataaaatttagatcaagtttgttaatgtcaaattagtcatc |
90584 |
T |
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| Q |
219 |
aaattaatggtcaaaatcatgagttgatcaaattggatggtcacaatcaatttaacacctcattttttaaaactaataagctaaaacaatcaccaacact |
318 |
Q |
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| T |
90585 |
aaattaatggtcaaaatcatgagttgatcaaattggatggtcacaatcaatttaacacctcattttttaaaactaataagctaaaacaatcaccaacact |
90684 |
T |
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| Q |
319 |
tccaatattttcattgggtgcatcttttaaa |
349 |
Q |
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| T |
90685 |
tcaaatattttcatggggtgcatcttttaaa |
90715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 352 - 524
Target Start/End: Original strand, 90795 - 90967
Alignment:
| Q |
352 |
tcaccaactaattatgaagtaaattttgtgttacatgcagactggagtgacatgacaaatgggtatctagagactccaatagattgggtgctaggcataa |
451 |
Q |
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| T |
90795 |
tcaccaactaattatgaagtaatttttgtgttacatgcagactggagtgacatgacaaatgggtatctagagactccaatagattgggtgccaggcataa |
90894 |
T |
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| Q |
452 |
aagaaattcgattgaaagatcttccaagcttcataagaaccacagacccaaatgatccaatgattgagttcat |
524 |
Q |
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| T |
90895 |
aagaaattcgattgaaagatcttccaagcttcataagaaccacagacccaaatgatccaatgattgagttcat |
90967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 365 - 507
Target Start/End: Complemental strand, 26672836 - 26672692
Alignment:
| Q |
365 |
atgaagtaaattttgtgtt--acatgcagactggagtgacatgacaaatgggtatctagagactccaatagattgggtgctaggcataaaagaaattcga |
462 |
Q |
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| T |
26672836 |
atgaagtaaattatgtgtttgacatgcagactccagttatataacaaatgggtatttggagactaccatagattgggtgccaggcataaaagaaatccga |
26672737 |
T |
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| Q |
463 |
ttgaaagatcttccaagcttcataagaaccacagacccaaatgat |
507 |
Q |
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| T |
26672736 |
ttaaaggatatcccaagcttcatcagaaccacaaaccctaatgat |
26672692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 365 - 507
Target Start/End: Complemental strand, 26944434 - 26944290
Alignment:
| Q |
365 |
atgaagtaaattttgtgtt--acatgcagactggagtgacatgacaaatgggtatctagagactccaatagattgggtgctaggcataaaagaaattcga |
462 |
Q |
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| T |
26944434 |
atgaagtaaattatgtgtttgacatgcagactccagttatataacaaatgggtatttggagactaccatagattgggtgccaggcataaaagaaatccga |
26944335 |
T |
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| Q |
463 |
ttgaaagatcttccaagcttcataagaaccacagacccaaatgat |
507 |
Q |
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| T |
26944334 |
ttaaaggatatcccaagcttcatcagaaccacaaaccctaatgat |
26944290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 507
Target Start/End: Complemental strand, 26902085 - 26901984
Alignment:
| Q |
406 |
acaaatgggtatctagagactccaatagattgggtgctaggcataaaagaaattcgattgaaagatcttccaagcttcataagaaccacagacccaaatg |
505 |
Q |
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|||||||||||| | |||||| |||| |||||||| | ||||||||||||||| || | | ||| | |||| ||||| ||||||||||| ||||||| |
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| T |
26902085 |
acaaatgggtatttggagactacaattgattgggtaccaggcataaaagaaatcagactaagagacatcccaactttcattagaaccacagatccaaatg |
26901986 |
T |
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| Q |
506 |
at |
507 |
Q |
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|| |
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| T |
26901985 |
at |
26901984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Original strand, 856 - 897
Alignment:
| Q |
466 |
aaagatcttccaagcttcataagaaccacagacccaaatgat |
507 |
Q |
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| T |
856 |
aaagatcttccaagcttcataagaatcacagatctaaatgat |
897 |
T |
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