View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_low_9 (Length: 527)
Name: NF8577_low_9
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 53128724 - 53128856
Alignment:
| Q |
4 |
tacactttagagatataagtaccgatgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccgctgattt |
103 |
Q |
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| T |
53128724 |
tacactttagagatataagtaccgatgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccactgattt |
53128823 |
T |
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| Q |
104 |
tccaattcatagttatgaaattataatgccaaa |
136 |
Q |
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| T |
53128824 |
tccaattcatagttatgaacttataatgccaaa |
53128856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 170 - 345
Target Start/End: Original strand, 53111315 - 53111490
Alignment:
| Q |
170 |
taagaaataacatatttgactatttaagcaaactaaaacatagtaacatctcaaacctggaaatccagtgacaccgacaatgtcaaatcgcttcacacta |
269 |
Q |
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| T |
53111315 |
taagaaagaacatatttgactatttaagcaaactaaaactttgtaacatctcaaacctggaaatccagtgacaccagcaatgtcacctcgcttcacatta |
53111414 |
T |
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| Q |
270 |
gaatgcaattttttaaattcatccacatccaagtcagaactcctgcatcccagagatataacttgttttagttttg |
345 |
Q |
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| T |
53111415 |
gaatggaattttccaaattcaacctcattcaagtcagattttctgcatcccagagatataacttgttttagttttg |
53111490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 53116504 - 53116654
Alignment:
| Q |
185 |
ttgactatttaagcaaactaaaacatagtaacatctcaaacctggaaatccagtgacaccgacaatgtcaaatcgcttcacactagaatgcaatttttta |
284 |
Q |
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| T |
53116504 |
ttgaatatttaagcaa-ctaaaacattgtaacatcttaaacctggaaatccaatgacaccaacagtgtcacctcgttccacagtagaatggaatttgcaa |
53116602 |
T |
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| Q |
285 |
aattcatccacatccaagtcagaactcctgcatcccagagatataacttgtt |
336 |
Q |
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| T |
53116603 |
aattcaacctcatccaagtcggatatcctgcatcccggagataaaacttgtt |
53116654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 53111138 - 53111237
Alignment:
| Q |
29 |
tgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccgctgattttccaattcatagttatgaaattata |
128 |
Q |
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| T |
53111138 |
tgtttagattgtgctaaaatacaagcacatata--aaacaaactatgaagatcttaaaatct-aaccattgatttttcaattcatagttttaaacttata |
53111234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 493
Target Start/End: Original strand, 53111585 - 53111648
Alignment:
| Q |
425 |
aaaaatcatccaactcctacaaagttagtcaaacattaaggtaagataaaaaggaaaagggatactaca |
493 |
Q |
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| T |
53111585 |
aaaaatcatccatctgctacaaatttagtcaaacatcaaggtaag-----aaggaaaagggatactaca |
53111648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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